View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18290_high_7 (Length: 380)
Name: NF18290_high_7
Description: NF18290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18290_high_7 |
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| [»] chr3 (3 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0318 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 162 - 354
Target Start/End: Original strand, 8382429 - 8382622
Alignment:
| Q |
162 |
gctttatagaatttggtaggtgtggggaagtaagaatcattcattattgtt-gtgggagcattgatgtggacgtgggtttttcttacctttttacttgtg |
260 |
Q |
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| T |
8382429 |
gctttatagaatttggtaggtgtgggcaagtaagaatcattcattattgtttgtgggagcattggtgtggacgtgggtttttcttacctttttactggtg |
8382528 |
T |
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| Q |
261 |
ttttggaatctagttggttgatctctgctaagagaaacagaaagggaaagagaaagtgtgggcaataataatagtggtttgatttctattaaaa |
354 |
Q |
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| T |
8382529 |
ttttggaatctagttggttgatctctgctaagagaaacagaaagggaaagagaaagtgtgggcaataataatagtggtttgatttctattaaaa |
8382622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 8382303 - 8382429
Alignment:
| Q |
1 |
cttccatttctctgcttgtaggtgataaaaagtagtagatagagaatagagaatgcaacaatgaaaccaaattaagtagagaatagagaatttatggcca |
100 |
Q |
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| T |
8382303 |
cttccatttctctgcttgtaggtgataaaaagtagtagatagagaatagagaatgcaacaatgaaaccaaattaagtagagaatagagaatttatggcca |
8382402 |
T |
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| Q |
101 |
gtgaatgatgcttcatttctctaattg |
127 |
Q |
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| T |
8382403 |
gtgaatgatgcttcatttctctaattg |
8382429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Complemental strand, 1902010 - 1901976
Alignment:
| Q |
346 |
ctattaaaataaagagaaatgatatttgtacaacc |
380 |
Q |
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| T |
1902010 |
ctattaaaaaaaagagaaatgatatttgtacaacc |
1901976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Complemental strand, 1911456 - 1911422
Alignment:
| Q |
346 |
ctattaaaataaagagaaatgatatttgtacaacc |
380 |
Q |
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| T |
1911456 |
ctattaaaaaaaagagaaatgatatttgtacaacc |
1911422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 380
Target Start/End: Complemental strand, 35376638 - 35376601
Alignment:
| Q |
343 |
tttctattaaaataaagagaaatgatatttgtacaacc |
380 |
Q |
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| T |
35376638 |
tttcttttaaattaaagagaaatgatatttgtacaacc |
35376601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 380
Target Start/End: Complemental strand, 49615354 - 49615325
Alignment:
| Q |
351 |
aaaataaagagaaatgatatttgtacaacc |
380 |
Q |
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| T |
49615354 |
aaaataaagagaaatgatatttgtacaacc |
49615325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 348 - 380
Target Start/End: Original strand, 11947784 - 11947816
Alignment:
| Q |
348 |
attaaaataaagagaaatgatatttgtacaacc |
380 |
Q |
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| T |
11947784 |
attaaaattaagagaaatgatatttgtacaacc |
11947816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0318 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0318
Description:
Target: scaffold0318; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 352 - 380
Target Start/End: Complemental strand, 18357 - 18329
Alignment:
| Q |
352 |
aaataaagagaaatgatatttgtacaacc |
380 |
Q |
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| T |
18357 |
aaataaagagaaatgatatttgtacaacc |
18329 |
T |
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