View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18290_high_8 (Length: 379)

Name: NF18290_high_8
Description: NF18290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18290_high_8
NF18290_high_8
[»] chr6 (23 HSPs)
chr6 (213-295)||(12102022-12102104)
chr6 (17-123)||(27822134-27822240)
chr6 (44-123)||(12882090-12882169)
chr6 (56-116)||(8049020-8049080)
chr6 (19-107)||(14238419-14238507)
chr6 (44-123)||(11658899-11658977)
chr6 (47-116)||(1127228-1127297)
chr6 (54-123)||(33615557-33615625)
chr6 (44-123)||(22873780-22873860)
chr6 (47-121)||(33215209-33215282)
chr6 (56-117)||(12778454-12778515)
chr6 (58-123)||(32361336-32361401)
chr6 (60-136)||(24443130-24443203)
chr6 (54-90)||(3536034-3536070)
chr6 (54-90)||(29340859-29340895)
chr6 (60-122)||(3535972-3536035)
chr6 (60-122)||(3542183-3542246)
chr6 (54-90)||(3542245-3542281)
chr6 (308-360)||(9438364-9438415)
chr6 (17-107)||(18727089-18727180)
chr6 (80-116)||(18727924-18727960)
chr6 (54-86)||(30049920-30049952)
chr6 (54-86)||(30052207-30052239)
[»] chr1 (30 HSPs)
chr1 (48-123)||(31915517-31915592)
chr1 (16-116)||(50713687-50713787)
chr1 (44-116)||(12944090-12944162)
chr1 (54-136)||(10927151-10927228)
chr1 (44-117)||(33152762-33152835)
chr1 (44-116)||(8221462-8221534)
chr1 (49-107)||(28660794-28660852)
chr1 (47-116)||(10928263-10928332)
chr1 (19-108)||(31913359-31913447)
chr1 (54-136)||(8967857-8967936)
chr1 (17-116)||(239661-239760)
chr1 (54-116)||(43681435-43681497)
chr1 (54-123)||(10925708-10925776)
chr1 (31-116)||(21903726-21903810)
chr1 (54-123)||(28659620-28659688)
chr1 (313-358)||(49251382-49251426)
chr1 (313-360)||(3532961-3533007)
chr1 (313-360)||(6014505-6014551)
chr1 (313-360)||(19793588-19793634)
chr1 (54-136)||(23987529-23987612)
chr1 (313-360)||(37733817-37733863)
chr1 (46-120)||(40058147-40058222)
chr1 (78-116)||(36694230-36694268)
chr1 (78-116)||(36710331-36710369)
chr1 (85-122)||(8931158-8931195)
chr1 (54-123)||(9194995-9195063)
chr1 (54-87)||(13444041-13444074)
chr1 (54-90)||(8931220-8931256)
chr1 (56-116)||(9030991-9031051)
chr1 (314-358)||(21884639-21884682)
[»] chr7 (34 HSPs)
chr7 (44-136)||(24840100-24840189)
chr7 (44-136)||(27142623-27142712)
chr7 (44-116)||(1369779-1369851)
chr7 (54-117)||(3778761-3778824)
chr7 (18-136)||(11000843-11000958)
chr7 (54-136)||(4888738-4888818)
chr7 (17-116)||(5934578-5934677)
chr7 (54-123)||(1365639-1365708)
chr7 (54-136)||(1786640-1786719)
chr7 (54-136)||(8916430-8916509)
chr7 (54-136)||(11228938-11229017)
chr7 (44-123)||(6451793-6451871)
chr7 (46-113)||(7803076-7803143)
chr7 (44-91)||(27309658-27309705)
chr7 (44-98)||(1753641-1753695)
chr7 (81-123)||(2767898-2767940)
chr7 (47-116)||(11228694-11228764)
chr7 (54-136)||(30217770-30217851)
chr7 (44-123)||(1874508-1874584)
chr7 (68-116)||(1690198-1690246)
chr7 (44-123)||(1883461-1883535)
chr7 (313-360)||(14102523-14102569)
chr7 (313-360)||(14412540-14412586)
chr7 (47-101)||(13466720-13466774)
chr7 (54-90)||(859209-859245)
chr7 (54-90)||(1217213-1217249)
chr7 (54-90)||(13882739-13882775)
chr7 (17-116)||(4133290-4133389)
chr7 (59-136)||(35814828-35814902)
chr7 (314-360)||(8214172-8214217)
chr7 (54-87)||(13886212-13886245)
chr7 (54-90)||(1220493-1220529)
chr7 (314-358)||(22965946-22965989)
chr7 (308-360)||(29658254-29658305)
[»] chr3 (14 HSPs)
chr3 (48-120)||(2472735-2472807)
chr3 (55-135)||(8536427-8536504)
chr3 (17-92)||(33175833-33175908)
chr3 (54-122)||(45168372-45168443)
chr3 (313-360)||(45713542-45713588)
chr3 (63-107)||(365654-365698)
chr3 (76-116)||(1320124-1320164)
chr3 (48-116)||(2107901-2107968)
chr3 (54-90)||(5128909-5128945)
chr3 (54-90)||(43304013-43304049)
chr3 (57-90)||(3063793-3063826)
chr3 (315-359)||(335019-335062)
chr3 (308-360)||(30157064-30157115)
chr3 (54-90)||(43306725-43306761)
[»] chr2 (24 HSPs)
chr2 (18-136)||(23457603-23457718)
chr2 (46-116)||(32162014-32162084)
chr2 (47-123)||(4184896-4184972)
chr2 (44-123)||(12966444-12966522)
chr2 (44-136)||(5171628-5171717)
chr2 (54-136)||(33051575-33051654)
chr2 (17-117)||(36647266-36647365)
chr2 (29-136)||(21772331-21772435)
chr2 (56-136)||(36648922-36649001)
chr2 (57-136)||(36615165-36615243)
chr2 (54-136)||(1518147-1518229)
chr2 (55-117)||(12123950-12124012)
chr2 (44-135)||(23456533-23456621)
chr2 (17-107)||(15129373-15129462)
chr2 (56-136)||(28737794-28737872)
chr2 (52-90)||(33655628-33655666)
chr2 (54-90)||(22011436-22011472)
chr2 (54-90)||(27952371-27952407)
chr2 (44-116)||(32163814-32163886)
chr2 (58-121)||(8294548-8294610)
chr2 (313-360)||(34018057-34018103)
chr2 (59-109)||(18945941-18945991)
chr2 (69-115)||(25458215-25458261)
chr2 (60-113)||(31636284-31636338)
[»] chr5 (12 HSPs)
chr5 (19-137)||(492522-492638)
chr5 (54-123)||(19497357-19497426)
chr5 (54-136)||(26140300-26140379)
chr5 (54-116)||(18252390-18252452)
chr5 (44-97)||(9868448-9868501)
chr5 (44-105)||(8456422-8456483)
chr5 (54-90)||(21849018-21849054)
chr5 (62-116)||(22440832-22440886)
chr5 (317-358)||(4216806-4216846)
chr5 (315-360)||(30403812-30403856)
chr5 (313-358)||(33729842-33729886)
chr5 (54-90)||(40778839-40778875)
[»] chr4 (24 HSPs)
chr4 (46-136)||(10494860-10494947)
chr4 (48-123)||(40206116-40206191)
chr4 (44-136)||(13991422-13991511)
chr4 (54-123)||(13990730-13990798)
chr4 (44-116)||(18689564-18689636)
chr4 (44-116)||(38888033-38888105)
chr4 (44-136)||(7634037-7634126)
chr4 (44-116)||(7724120-7724189)
chr4 (54-116)||(9260547-9260609)
chr4 (55-135)||(22486830-22486905)
chr4 (18-91)||(54700614-54700687)
chr4 (44-116)||(15848379-15848450)
chr4 (44-116)||(18657085-18657157)
chr4 (17-116)||(17254899-17254998)
chr4 (69-107)||(24667640-24667678)
chr4 (54-90)||(6659383-6659419)
chr4 (44-92)||(7723706-7723753)
chr4 (59-123)||(19935454-19935518)
chr4 (313-360)||(22478727-22478773)
chr4 (313-360)||(28221294-28221340)
chr4 (62-116)||(21433624-21433678)
chr4 (54-116)||(53477267-53477329)
chr4 (315-360)||(12856246-12856290)
chr4 (80-116)||(50519224-50519260)
[»] chr8 (30 HSPs)
chr8 (54-113)||(18468626-18468685)
chr8 (46-116)||(14130139-14130209)
chr8 (17-117)||(2189738-2189837)
chr8 (54-136)||(2687699-2687778)
chr8 (44-116)||(20693773-20693845)
chr8 (44-136)||(2689104-2689192)
chr8 (49-136)||(2609543-2609627)
chr8 (17-136)||(24730989-24731105)
chr8 (27-136)||(24577554-24577660)
chr8 (17-116)||(24731201-24731300)
chr8 (44-116)||(26374874-26374945)
chr8 (57-136)||(2188397-2188475)
chr8 (48-136)||(16598205-16598291)
chr8 (47-136)||(25479451-25479537)
chr8 (46-136)||(24578822-24578909)
chr8 (73-136)||(16598123-16598183)
chr8 (54-90)||(22512099-22512135)
chr8 (54-90)||(22519399-22519435)
chr8 (54-90)||(22926701-22926737)
chr8 (54-90)||(42891717-42891753)
chr8 (17-88)||(42890394-42890464)
chr8 (56-90)||(22921905-22921939)
chr8 (60-117)||(37189809-37189867)
chr8 (56-90)||(37189866-37189900)
chr8 (308-358)||(43874959-43875008)
chr8 (315-360)||(15042354-15042398)
chr8 (315-359)||(5184876-5184919)
chr8 (46-90)||(22520845-22520888)
chr8 (54-90)||(23570584-23570620)
chr8 (54-90)||(23573583-23573619)
[»] scaffold0251 (1 HSPs)
scaffold0251 (73-136)||(9659-9719)
[»] scaffold0240 (3 HSPs)
scaffold0240 (48-119)||(1629-1700)
scaffold0240 (56-117)||(14820-14881)
scaffold0240 (78-119)||(14374-14415)
[»] scaffold0330 (1 HSPs)
scaffold0330 (48-119)||(17611-17682)
[»] scaffold0024 (2 HSPs)
scaffold0024 (55-117)||(145707-145769)
scaffold0024 (55-136)||(143974-144049)
[»] scaffold0054 (2 HSPs)
scaffold0054 (54-108)||(49304-49358)
scaffold0054 (44-123)||(37680-37756)
[»] scaffold0090 (1 HSPs)
scaffold0090 (72-116)||(15135-15179)
[»] scaffold0110 (1 HSPs)
scaffold0110 (54-122)||(46786-46855)
[»] scaffold0184 (1 HSPs)
scaffold0184 (54-114)||(14178-14238)
[»] scaffold0078 (1 HSPs)
scaffold0078 (54-114)||(58606-58666)


Alignment Details
Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 213 - 295
Target Start/End: Complemental strand, 12102104 - 12102022
Alignment:
Q  213 ttatatgagaaatacgaaggatggcttactttctatatgcaattaatccacaatagacttaagataaccaataacaaagtaaa 295  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12102104 ttatatgagaaatatgaaggatggcttactttctatatgcaattaatccacaatagacttaagataaccaataacaaagtaaa 12102022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 123
Target Start/End: Original strand, 27822134 - 27822240
Alignment:
Q  17 cgtaggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||| |||||||||||| |   | ||||||  |||||||| |||| |||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  27822134 cgtaggctagcaaacgctaaacctaaatagaaaaggaacaagttttcaagcgacaaacttgtgaaaacagggttccgaaatccaccagaaattgagaaaa 27822233  T
Q  117 actctct 123  Q
    |||||||    
T  27822234 actctct 27822240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 12882169 - 12882090
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    |||| |||| ||||||||  ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12882169 ttgagaagagacaagttttaaagcgacaaacttgtgaaaatagggtttcggaatccaccagaaattgagaaaaactctct 12882090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 8049020 - 8049080
Alignment:
Q  56 aagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||||| |||||||||||||||||| || ||||| |||||||||||||||||||||    
T  8049020 aagtttgcaagtgacaaacttgtgaaaataaggctccgggatccaccagaaattgagaaaa 8049080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 14238507 - 14238419
Alignment:
Q  19 taggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaa 107  Q
    ||||||| ||||| |||||| |   ||||||||| ||||||||||||| |||||||||||||||||| ||||||||| |||| ||||||    
T  14238507 taggctagcaaacactaaacataaattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaataaggttccggagtccatcagaaa 14238419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 11658977 - 11658899
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    ||||||||| |||| |||||||| || |||||||||||||||| |||  ||||||||||| |||||||||||||||||||    
T  11658977 ttgaaaaga-acaaatttgcaagcgataaacttgtgaaaatagagttttggaatccaccaaaaattgagaaaaactctct 11658899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 1127297 - 1127228
Alignment:
Q  47 aaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    |||||| ||||||||||||| |||||| |||||||||||| ||| |||||| ||||| ||||||||||||    
T  1127297 aaaagaaacaagtttgcaagcgacaaatttgtgaaaatagtgtttcggaatacaccaaaaattgagaaaa 1127228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 33615557 - 33615625
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    ||||||||||||| ||||||||||||||||||||||| | |||| ||||| ||||||| |||||||||||    
T  33615557 acaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattga-aaaaactctct 33615625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 22873860 - 22873780
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccacc-agaaattgagaaaaactctct 123  Q
    ||||||||| ||||||||||| | |||||||||||||||  | |||||||||||||||| | |||||||||||| ||||||    
T  22873860 ttgaaaagagacaagtttgcatgcgacaaacttgtgaaataaaggttccggaatccaccaaaaaattgagaaaagctctct 22873780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 33215209 - 33215282
Alignment:
Q  47 aaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactct 121  Q
    |||||| ||||||||||||| ||||||| |||||||||   |||||| ||||||||||||||||| |||||||||    
T  33215209 aaaagaaacaagtttgcaagcgacaaacctgtgaaaatcaagttccgtaatccaccagaaattga-aaaaactct 33215282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 12778454 - 12778515
Alignment:
Q  56 aagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaa 117  Q
    ||||||||||| || || |||||||||||| ||||| |||||| ||||||||||||||||||    
T  12778454 aagtttgcaagcgataatcttgtgaaaataaggttctggaatctaccagaaattgagaaaaa 12778515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 123
Target Start/End: Complemental strand, 32361401 - 32361336
Alignment:
Q  58 gtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    ||||||||| || ||| |||| |||||| |||||||||||| || |||||||||||||||||||||    
T  32361401 gtttgcaagcgataaaattgtaaaaataaggttccggaatctacgagaaattgagaaaaactctct 32361336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 24443130 - 24443203
Alignment:
Q  60 ttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||| ||||||||| | ||||||||||||| ||||| |||||||||| ||||||   ||||||| |||||||||    
T  24443130 ttgcaagcgacaaacttataaaaatagggttccagaatcaaccagaaattaagaaaa---ctctctgcaatattatt 24443203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 3536070 - 3536034
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||| |||||||||||||||||||||||    
T  3536070 acaagtttgcaagcgacaaacttgtgaaaatagggtt 3536034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 29340859 - 29340895
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||| |||||||||||||||||||||||    
T  29340859 acaagtttgcaagcgacaaacttgtgaaaatagggtt 29340895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 3536035 - 3535972
Alignment:
Q  60 ttgcaagggacaaacttgtgaaaata-gggttccggaatccaccagaaattgagaaaaactctc 122  Q
    ||||||| ||||||| | | |||||| |||||||||||||||||||||||||||| ||| ||||    
T  3536035 ttgcaagcgacaaacctatcaaaataagggttccggaatccaccagaaattgagagaaaatctc 3535972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 122
Target Start/End: Complemental strand, 3542246 - 3542183
Alignment:
Q  60 ttgcaagggacaaacttgtgaaaata-gggttccggaatccaccagaaattgagaaaaactctc 122  Q
    ||||||| ||||||| | | |||||| |||||||||||||||||||||||||||| ||| ||||    
T  3542246 ttgcaagcgacaaacctatcaaaataagggttccggaatccaccagaaattgagagaaaatctc 3542183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 3542281 - 3542245
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  3542281 acaagtttgtaagcgacaaacttgtgaaaatagggtt 3542245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 9438415 - 9438364
Alignment:
Q  308 agtaccctagtagttagaattcacattataaggtgaattaagtggggtgtccg 360  Q
    |||| |||||| |||||||||||| |||||||||||| | |||||||||||||    
T  9438415 agtagcctagtggttagaattcaccttataaggtgaa-tgagtggggtgtccg 9438364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 18727180 - 18727089
Alignment:
Q  17 cgtaggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtg-aaaata-gggttccggaatccaccagaaa 107  Q
    ||||||||| |||||||||||| |   ||||||| | ||||||| ||||| |||||||||||| |||||| |||||| | |||||||||||||    
T  18727180 cgtaggctagcaaacgctaaacctagattgaaaa-acacaagttcgcaagcgacaaacttgtgaaaaataggggttctgaaatccaccagaaa 18727089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 18727924 - 18727960
Alignment:
Q  80 aaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  18727924 aaaataaggttccgaaatccaccagaaattgagaaaa 18727960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 30049952 - 30049920
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatag 86  Q
    ||||||||||||| |||||||||||||||||||    
T  30049952 acaagtttgcaagcgacaaacttgtgaaaatag 30049920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 30052239 - 30052207
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatag 86  Q
    ||||||||||||| |||||||||||||||||||    
T  30052239 acaagtttgcaagcgacaaacttgtgaaaatag 30052207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 31915592 - 31915517
Alignment:
Q  48 aaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31915592 aaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 31915517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 50713787 - 50713687
Alignment:
Q  16 acgtaggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaa 115  Q
    |||||||||| ||| |||||||| |   ||||||||| ||||||| ||| | ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  50713787 acgtaggctaacaaccgctaaacctagattgaaaagagacaagttcgcaggcgacaaacttgtgaaaatagggtttcggaatccaccagaaattgagaaa 50713688  T
Q  116 a 116  Q
    |    
T  50713687 a 50713687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 12944162 - 12944090
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||| ||||||||||||  ||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  12944162 ttgaaaagaaacaagtttgcaaacgacaaacttgtaaaaatagggttctggaatccaccagaaattgagaaaa 12944090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 10927228 - 10927151
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||   |||||| ||||||||||    
T  10927228 acaagtttgcaagcgacaaacttgtgaaaa--gggttccggaatccaccagaaattgagaaaa---ctctctaaaatattatt 10927151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 117
Target Start/End: Original strand, 33152762 - 33152835
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaa 117  Q
    ||||||||| ||||||||||||| |||||||||  || |||||||||||||||||||||||||||| |||||||    
T  33152762 ttgaaaagaaacaagtttgcaagcgacaaacttacgacaatagggttccggaatccaccagaaattaagaaaaa 33152835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 8221534 - 8221462
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||| ||| ||||||||||||  ||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  8221534 ttgaatagagacaagtttgcaaacgacaaacttatgaaaatagggttctggaatccaccagaaattgagaaaa 8221462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 28660794 - 28660852
Alignment:
Q  49 aagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaa 107  Q
    |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||    
T  28660794 aagaaacaagtttgcaagcgacaaacttgtgaaaatagggttccgaaatccaccagaaa 28660852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 10928332 - 10928263
Alignment:
Q  47 aaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    |||||||| ||||||| ||| |||||||||||||||||| |||| |||||||||| | ||||||||||||    
T  10928332 aaaagatataagtttgtaagtgacaaacttgtgaaaataaggtttcggaatccactataaattgagaaaa 10928263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 31913447 - 31913359
Alignment:
Q  19 taggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaat 108  Q
    ||||||| ||| |||||||| |  ||||||| || ||||||||||||| ||||||||||| |||||||| ||||| ||||||||||||||    
T  31913447 taggctagcaagcgctaaacctaggttgaaa-gaaacaagtttgcaagcgacaaacttgtaaaaataggtttccgaaatccaccagaaat 31913359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 8967857 - 8967936
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||||||||  ||||||| | ||||||||||||||| |||||||||| |||||| |||||   |||||||||||||||||    
T  8967857 acaagtttgcaaatgacaaacctatgaaaatagggttccagaatccaccaaaaattgtgaaaa---ctctctgaaatattatt 8967936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 239760 - 239661
Alignment:
Q  17 cgtaggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||| |||  |||||||||   || |||||| ||||||| ||||| | |||| || ||||||||||||||||||||||| | |||||| ||||||    
T  239760 cgtaggctagcaagggctaaacttatattaaaaagaaacaagttagcaagcgtcaaatttatgaaaatagggttccggaatccaactgaaattaagaaaa 239661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 43681497 - 43681435
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||||||| |||||| |||||||||||| | ||| ||||| |||||||||| ||||||    
T  43681497 acaagtttgcaagcgacaaatttgtgaaaatagagatccagaatctaccagaaattaagaaaa 43681435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 10925776 - 10925708
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    |||| |||||||| ||||||||||| |||||| ||||| ||||||||||  ||||||| |||||||||||    
T  10925776 acaattttgcaagcgacaaacttgtaaaaatatggttctggaatccaccgaaaattga-aaaaactctct 10925708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 21903810 - 21903726
Alignment:
Q  31 cgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||||   ||||||||| | ||||||| | | ||||| ||||||||||||||||| |||||||||| | ||||||||||||    
T  21903810 cgctaaacttagattgaaaagaaataagtttgtaggcgacaa-cttgtgaaaatagggtttcggaatccacaaaaaattgagaaaa 21903726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 28659620 - 28659688
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    |||||||||||||||| |||||||||||||| || |||||  |||||| ||||||| | |||||||||||    
T  28659620 acaagtttgcaagggataaacttgtgaaaattggattccgatatccactagaaatt-aaaaaaactctct 28659688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 358
Target Start/End: Original strand, 49251382 - 49251426
Alignment:
Q  313 cctagtagttagaattcacattataaggtgaattaagtggggtgtc 358  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||    
T  49251382 cctagtggttagaattcacattataaggtgaa-taagtggggtgtc 49251426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 3532961 - 3533007
Alignment:
Q  313 cctagtagttagaattcacattataaggtgaattaagtggggtgtccg 360  Q
    |||||||| |||||||||| |||||||||||| |||||||||||||||    
T  3532961 cctagtagctagaattcaccttataaggtgaa-taagtggggtgtccg 3533007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 6014505 - 6014551
Alignment:
Q  313 cctagtagttagaattcacattataaggtgaattaagtggggtgtccg 360  Q
    |||| |||||||||||||| |||||||||||| |||||||||||||||    
T  6014505 cctaatagttagaattcaccttataaggtgaa-taagtggggtgtccg 6014551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 19793634 - 19793588
Alignment:
Q  313 cctagtagttagaattcacattataaggtgaattaagtggggtgtccg 360  Q
    |||||| |||||||||||| |||||||||||| |||||||||||||||    
T  19793634 cctagtggttagaattcaccttataaggtgaa-taagtggggtgtccg 19793588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 23987612 - 23987529
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatag----ggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    |||| |||||||  ||||||||||||||||||     ||||||||||||||||||||||||||| ||   |||||| ||||||||||    
T  23987612 acaactttgcaaacgacaaacttgtgaaaatatagaaggttccggaatccaccagaaattgagataa---ctctctaaaatattatt 23987529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 37733863 - 37733817
Alignment:
Q  313 cctagtagttagaattcacattataaggtgaattaagtggggtgtccg 360  Q
    |||||| |||||||||||| |||||||||||| |||||||||||||||    
T  37733863 cctagtggttagaattcaccttataaggtgaa-taagtggggtgtccg 37733817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 40058147 - 40058222
Alignment:
Q  46 gaaaagatacaagtttgcaagggacaaacttgtg-aaaatagggttccggaatccaccagaaattgagaaaaactc 120  Q
    ||||||| | ||||||||||| ||||||||| || ||||||||||| | ||||| ||||  |||||||||||||||    
T  40058147 gaaaagaaataagtttgcaagcgacaaacttatgaaaaatagggtttcagaatcaaccaacaattgagaaaaactc 40058222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 36694230 - 36694268
Alignment:
Q  78 tgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  36694230 tgaaaatagggttgcggaatccatcagaaattgagaaaa 36694268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 36710331 - 36710369
Alignment:
Q  78 tgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  36710331 tgaaaatagggttgcggaatccatcagaaattgagaaaa 36710369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 122
Target Start/End: Complemental strand, 8931195 - 8931158
Alignment:
Q  85 agggttccggaatccaccagaaattgagaaaaactctc 122  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  8931195 agggttccggaatccaccagaaattgagagaaaatctc 8931158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 9194995 - 9195063
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    ||||||||||||| ||||||| ||||  ||||||||||   ||||||||| ||||||| |||||||||||    
T  9194995 acaagtttgcaagcgacaaacatgtgttaatagggttcaataatccaccaaaaattga-aaaaactctct 9195063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 13444041 - 13444074
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagg 87  Q
    ||||||||||||| ||||||||||||||||||||    
T  13444041 acaagtttgcaagcgacaaacttgtgaaaatagg 13444074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 8931256 - 8931220
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||| || ||||||||||||||||||||    
T  8931256 acaagtttgcaagcgataaacttgtgaaaatagggtt 8931220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 9031051 - 9030991
Alignment:
Q  56 aagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    |||||||||||  | |||||| |||||||||||||   |||||||||| ||||||||||||    
T  9031051 aagtttgcaagcaataaacttatgaaaatagggttgtagaatccaccataaattgagaaaa 9030991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 358
Target Start/End: Complemental strand, 21884682 - 21884639
Alignment:
Q  314 ctagtagttagaattcacattataaggtgaattaagtggggtgtc 358  Q
    ||||| |||||||||||| |||||||||||| |||||||||||||    
T  21884682 ctagtggttagaattcaccttataaggtgaa-taagtggggtgtc 21884639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 24840189 - 24840100
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||   |||||| ||||||||||    
T  24840189 ttgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa---ctctctaaaatattatt 24840100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 27142712 - 27142623
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||   |||||||||||||||||    
T  27142712 ttgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttcctgaaaccaccagaaattgagaaaa---ctctctgaaatattatt 27142623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 1369851 - 1369779
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||| ||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||||    
T  1369851 ttgaaaagaaacaagtttgcaagcgataaacttgttaaaatagggttccggaatccaccagaaattgagaaaa 1369779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 54 - 117
Target Start/End: Original strand, 3778761 - 3778824
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaa 117  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  3778761 acaagtttgcaagcgagaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaa 3778824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 11000843 - 11000958
Alignment:
Q  18 gtaggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaa 117  Q
    |||||||| ||| |||||||| |   ||||||||| ||||||| ||||| |||||||| ||||||||||||||| |||||||||||||||||| |||||     
T  11000843 gtaggctagcaagcgctaaacctagattgaaaagaaacaagttcgcaagcgacaaactagtgaaaatagggttcaggaatccaccagaaattgggaaaa- 11000941  T
Q  118 ctctctctgaaatattatt 136  Q
      |||||| ||||||||||    
T  11000942 --ctctctaaaatattatt 11000958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 4888738 - 4888818
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||||||||| ||||||| ||||||||||| |||||||||| |||||||||||  ||||||| |||||| ||||||||||    
T  4888738 acaagtttgcaagcgacaaacctgtgaaaatagagttccggaattcaccagaaatt--gaaaaacactctctaaaatattatt 4888818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 5934677 - 5934578
Alignment:
Q  17 cgtaggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||| ||| |||||||| |   ||||||||| |||| |||||||| |||||||||||||||||||| || | |||||||  ||||||||||||||    
T  5934677 cgtaggctagcaagcgctaaacctagattgaaaagaaacaaatttgcaagcgacaaacttgtgaaaataggatttcagaatccattagaaattgagaaaa 5934578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 54 - 123
Target Start/End: Complemental strand, 1365708 - 1365639
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    ||||||||| ||| ||  |||||||||||||||||||||  ||||||||| |||||||||||||||||||    
T  1365708 acaagtttgtaagcgatgaacttgtgaaaatagggttccataatccaccaaaaattgagaaaaactctct 1365639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 1786719 - 1786640
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||||||||| ||||||| || |||||||||||||| ||||||| ||||||||| |||||   |||||| ||||||||||    
T  1786719 acaagtttgcaagcgacaaacatgcgaaaatagggttccagaatccatcagaaattgcgaaaa---ctctctaaaatattatt 1786640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 136
Target Start/End: Original strand, 8916430 - 8916509
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||||||||  || ||||||||| |||||| |||| ||||||||||||||||||||||||   |||||| ||||||||||    
T  8916430 acaagtttgcaaacgataaacttgtggaaatagagttctggaatccaccagaaattgagaaaa---ctctctaaaatattatt 8916509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 11229017 - 11228938
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||||||| | ||||||| |||||||| |||||||| |||||||||||||||||| ||||   |||||| ||||||||||    
T  11229017 acaagtttgcaggcgacaaacgtgtgaaaaaagggttccagaatccaccagaaattgataaaa---ctctctaaaatattatt 11228938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 123
Target Start/End: Original strand, 6451793 - 6451871
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    |||||| || ||||||||||||| ||||||| |||||||||| |||| ||||||||| || ||||||| |||||||||||    
T  6451793 ttgaaaggaaacaagtttgcaagcgacaaacctgtgaaaataaggtttcggaatccaacaaaaattga-aaaaactctct 6451871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 113
Target Start/End: Original strand, 7803076 - 7803143
Alignment:
Q  46 gaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgaga 113  Q
    ||||||| |||||||||||||  |||||||| |||||||| ||||||||||||||||| || ||||||    
T  7803076 gaaaagaaacaagtttgcaagcaacaaacttatgaaaataaggttccggaatccaccataatttgaga 7803143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 27309658 - 27309705
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttc 91  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  27309658 ttgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttc 27309705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 1753641 - 1753695
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatc 98  Q
    ||||||||| ||||||||||||| ||||||||||||||||||| ||||| |||||    
T  1753641 ttgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagagttccagaatc 1753695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 2767940 - 2767898
Alignment:
Q  81 aaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    |||||||||| ||||||||||||||||||||||||||||||||    
T  2767940 aaatagggtttcggaatccaccagaaattgagaaaaactctct 2767898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 47 - 116
Target Start/End: Complemental strand, 11228764 - 11228694
Alignment:
Q  47 aaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccag-aaattgagaaaa 116  Q
    |||||| ||||||||| ||| |||||||||||| |||||||||||  ||||||||||| ||||||||||||    
T  11228764 aaaagaaacaagtttggaagcgacaaacttgtggaaatagggttctagaatccaccagaaaattgagaaaa 11228694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 30217851 - 30217770
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||| ||||| ||||||||||||||||||| |||| | |||||||||| ||||||| | ||| |||||| ||||||||||    
T  30217851 acaagttcgcaagcgacaaacttgtgaaaatagagttctgaaatccaccagtaattgag-ataacactctctaaaatattatt 30217770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 1874584 - 1874508
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    ||||||||| ||||||||||||  |||||||||||||||||| |||||  |||||||||   ||||||| ||||||||||    
T  1874584 ttgaaaagaaacaagtttgcaaacgacaaacttgtgaaaataaggttcaagaatccacc---aattgaggaaaactctct 1874508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 1690198 - 1690246
Alignment:
Q  68 gacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    |||||| ||||||||||||||||| |||||||| |||||||||||||||    
T  1690198 gacaaatttgtgaaaatagggttctggaatccatcagaaattgagaaaa 1690246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 1883535 - 1883461
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    ||||||||| ||||||||||||  |||||||||||||||||| |||||| ||||| ||     |||||||||||||||||    
T  1883535 ttgaaaagaaacaagtttgcaaacgacaaacttgtgaaaataaggttccagaatcaac-----attgagaaaaactctct 1883461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 14102569 - 14102523
Alignment:
Q  313 cctagtagttagaattcacattataaggtgaattaagtggggtgtccg 360  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||    
T  14102569 cctagtagttagaattcaccttataaggtgaa-taagtggggtgtccg 14102523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 14412586 - 14412540
Alignment:
Q  313 cctagtagttagaattcacattataaggtgaattaagtggggtgtccg 360  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||    
T  14412586 cctagtagttagaattcaccttataaggtgaa-taagtggggtgtccg 14412540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 101
Target Start/End: Complemental strand, 13466774 - 13466720
Alignment:
Q  47 aaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccac 101  Q
    |||||| ||||||||||||   |||||||| ||||||||||||||||||||||||    
T  13466774 aaaagaaacaagtttgcaaaaaacaaacttatgaaaatagggttccggaatccac 13466720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 859209 - 859245
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||| |||||||||||||||||||||||    
T  859209 acaagtttgcaagcgacaaacttgtgaaaatagggtt 859245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 1217213 - 1217249
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||| |||||||||||||||||||||||    
T  1217213 acaagtttgcaagcgacaaacttgtgaaaatagggtt 1217249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 13882739 - 13882775
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||| |||||||||||||||||||||||    
T  13882739 acaagtttgcaagcgacaaacttgtgaaaatagggtt 13882775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 4133290 - 4133389
Alignment:
Q  17 cgtaggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||| |||| |||||||||   ||||| |   |||| ||| |||| ||||||||||||||||||| |||| | ||||| | ||||||||||||||    
T  4133290 cgtaggctagcaaatgctaaacttagattgaagatgaacaaattttcaagcgacaaacttgtgaaaatagagttctgaaatcccctagaaattgagaaaa 4133389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 35814902 - 35814828
Alignment:
Q  59 tttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    |||||||| ||||||||||| |||||| |||||  ||||| |||| ||||||||||||   |||||| ||||||||||    
T  35814902 tttgcaagcgacaaacttgtaaaaataaggttcttgaatctaccataaattgagaaaa---ctctctaaaatattatt 35814828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 360
Target Start/End: Complemental strand, 8214217 - 8214172
Alignment:
Q  314 ctagtagttagaattcacattataaggtgaattaagtggggtgtccg 360  Q
    ||||| |||||||||||| |||||||||||| |||||||||||||||    
T  8214217 ctagtggttagaattcaccttataaggtgaa-taagtggggtgtccg 8214172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 13886212 - 13886245
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagg 87  Q
    ||||||||||||| ||||||||||||||||||||    
T  13886212 acaagtttgcaagcgacaaacttgtgaaaatagg 13886245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 1220493 - 1220529
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||  |||||||||||||||||||||||    
T  1220493 acaagtttgcaaacgacaaacttgtgaaaatagggtt 1220529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 358
Target Start/End: Original strand, 22965946 - 22965989
Alignment:
Q  314 ctagtagttagaattcacattataaggtgaattaagtggggtgtc 358  Q
    ||||| |||||||||||| |||||||||||| |||||||||||||    
T  22965946 ctagtggttagaattcaccttataaggtgaa-taagtggggtgtc 22965989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 360
Target Start/End: Original strand, 29658254 - 29658305
Alignment:
Q  308 agtaccctagtagttagaattcacattataaggtgaattaagtggggtgtccg 360  Q
    |||| |||||| | |||||||||| |||||||||||| |||||||||||||||    
T  29658254 agtagcctagtggctagaattcaccttataaggtgaa-taagtggggtgtccg 29658305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 2472735 - 2472807
Alignment:
Q  48 aaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactc 120  Q
    ||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2472735 aaagagacaagtttgcaaccgacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactc 2472807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 8536427 - 8536504
Alignment:
Q  55 caagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattat 135  Q
    |||| |||||||||||| |||| |||||||||| |||||||||||||||||||||||| |||   |||||| |||||||||    
T  8536427 caaggttgcaagggacagacttttgaaaataggattccggaatccaccagaaattgaggaaa---ctctctaaaatattat 8536504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 92
Target Start/End: Complemental strand, 33175908 - 33175833
Alignment:
Q  17 cgtaggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttcc 92  Q
    ||||||||| |||||| ||||| |   ||||||||| |||||||||||| |||||||||| |||||||||||||||    
T  33175908 cgtaggctagcaaacgataaacctatattgaaaagagacaagtttgcaaaggacaaacttatgaaaatagggttcc 33175833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 45168372 - 45168443
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaa---atagggttccggaatccaccagaaattgagaaaaactctc 122  Q
    ||||||||||||| |||||||||||||||   |||||||||| |||||||| ||||||||||| ||| ||||    
T  45168372 acaagtttgcaagcgacaaacttgtgaaaaatatagggttccagaatccacaagaaattgagagaaaatctc 45168443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 45713588 - 45713542
Alignment:
Q  313 cctagtagttagaattcacattataaggtgaattaagtggggtgtccg 360  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||    
T  45713588 cctagtagttagaattcaccttataaggtgaa-taagtggggtgtccg 45713542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 365654 - 365698
Alignment:
Q  63 caagggacaaacttgtgaaaatagggttccggaatccaccagaaa 107  Q
    |||| ||||||||||||||||||||||||  ||||||||||||||    
T  365654 caagcgacaaacttgtgaaaatagggttcttgaatccaccagaaa 365698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 1320124 - 1320164
Alignment:
Q  76 tgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||||||||||| ||||||||||||||| |||||||    
T  1320124 tgtgaaaatagggttccagaatccaccagaaatagagaaaa 1320164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 2107901 - 2107968
Alignment:
Q  48 aaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||| ||| |||||||||  |||||||||| |||||| ||||||| ||||||||||| ||||||||||    
T  2107901 aaagaaacaggtttgcaagcaacaaacttgtaaaaataaggttccg-aatccaccagagattgagaaaa 2107968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 5128945 - 5128909
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||| |||||||||||||||||||||||    
T  5128945 acaagtttgcaagcgacaaacttgtgaaaatagggtt 5128909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 43304013 - 43304049
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||| |||||||||||||||||||||||    
T  43304013 acaagtttgcaagcgacaaacttgtgaaaatagggtt 43304049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 90
Target Start/End: Original strand, 3063793 - 3063826
Alignment:
Q  57 agtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    |||||||||| |||||||||||||||||||||||    
T  3063793 agtttgcaagcgacaaacttgtgaaaatagggtt 3063826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 335019 - 335062
Alignment:
Q  315 tagtagttagaattcacattataaggtgaattaagtggggtgtcc 359  Q
    |||||| |||||||||| |||||||||||| ||||||||||||||    
T  335019 tagtagctagaattcaccttataaggtgaa-taagtggggtgtcc 335062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 360
Target Start/End: Complemental strand, 30157115 - 30157064
Alignment:
Q  308 agtaccctagtagttagaattcacattataaggtgaattaagtggggtgtccg 360  Q
    |||| |||||| |||||||||||| |||||||||||| ||||| |||||||||    
T  30157115 agtagcctagtggttagaattcaccttataaggtgaa-taagttgggtgtccg 30157064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 43306725 - 43306761
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    |||||||||||||  ||||||||||||||||||||||    
T  43306725 acaagtttgcaagcaacaaacttgtgaaaatagggtt 43306761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 23457718 - 23457603
Alignment:
Q  18 gtaggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaa 117  Q
    |||||||| ||| |||||||| |   ||||||| | ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||     
T  23457718 gtaggctagcaagcgctaaacctagattgaaaataaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatccaccaaaaattgagaaaa- 23457620  T
Q  118 ctctctctgaaatattatt 136  Q
      |||||| ||||||||||    
T  23457619 --ctctctaaaatattatt 23457603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 32162014 - 32162084
Alignment:
Q  46 gaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  32162014 gaaaagaaacaagtttgcaagtgacaaacttgtgaaaatagggttcaggaatccaccagaaactgagaaaa 32162084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 123
Target Start/End: Complemental strand, 4184972 - 4184896
Alignment:
Q  47 aaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    |||||| | ||||| ||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  4184972 aaaagaaataagttcgcaagcgacaaacttgtgaaaatagggtttcggaatccacgagaaattgagaaaaactctct 4184896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 12966522 - 12966444
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    ||||||||| ||||||| ||||| ||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  12966522 ttgaaaaga-acaagttcgcaagcgacgaacttgtgaaaatagggttccgaaatccaccaaaaattgagaaaaactctct 12966444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 5171628 - 5171717
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||||||||  |||||||| ||||||||||||||   |||||| ||||||||||    
T  5171628 ttgaaaagagacaagtttgcaagcgacaaacttgtaaaaatagggttcaagaatccactagaaattgagaaaa---ctctctaaaatattatt 5171717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 33051654 - 33051575
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||||||||| ||||||||| |||||||||||||| ||||||||| ||||||||||||||   |||||| ||||||||||    
T  33051654 acaagtttgcaagcgacaaacttttgaaaatagggttctggaatccactagaaattgagaaaa---ctctctaaaatattatt 33051575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 36647365 - 36647266
Alignment:
Q  17 cgtaggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||| ||| |||||||| ||  ||||||||| ||||||||||||| |||||||||||||||||||||||  ||||||||||| ||| |||| |||    
T  36647365 cgtaggctagcaagcgctaaacctcgattgaaaaga-acaagtttgcaagcgacaaacttgtgaaaatagggttttggaatccaccaaaaaatgaggaaa 36647267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 21772435 - 21772331
Alignment:
Q  29 aacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaa 128  Q
    ||||||||||||   ||||||| | ||||||||||||| ||||||||| ||||||||||||||| ||||||| || |||||||| |||||||||| ||||    
T  21772435 aacgctaaacttagattgaaaaaa-acaagtttgcaagcgacaaacttatgaaaatagggttcctgaatccatcacaaattgag-aaaactctct-tgaa 21772339  T
Q  129 atattatt 136  Q
    ||||||||    
T  21772338 atattatt 21772331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 36649001 - 36648922
Alignment:
Q  56 aagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||||||| |||||| |||| |||||||||||| ||||||||||||||||| |||||||  |||||| ||||||||||    
T  36649001 aagtttgcaagcgacaaaattgtaaaaatagggttctggaatccaccagaaattaagaaaaa-actctctaaaatattatt 36648922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 57 - 136
Target Start/End: Complemental strand, 36615243 - 36615165
Alignment:
Q  57 agtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    |||||||||| |||||| |||| |||||| ||||||||||||||||||||||| |||||||  |||||| ||||||||||    
T  36615243 agtttgcaagcgacaaaattgtaaaaataaggttccggaatccaccagaaattaagaaaaa-actctctaaaatattatt 36615165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 1518229 - 1518147
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||| ||||| ||| ||||| |||||||||||||||| ||||||| |||||||||||||||  || ||| ||||||||||    
T  1518229 acaagttcgcaagcgacgaacttatgaaaatagggttccgaaatccactagaaattgagaaaaaaactttctaaaatattatt 1518147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 117
Target Start/End: Original strand, 12123950 - 12124012
Alignment:
Q  55 caagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaa 117  Q
    |||||||||||| ||||||| |||||||||| ||||| ||||||||||| |||||||||||||    
T  12123950 caagtttgcaagcgacaaacctgtgaaaatatggttcaggaatccaccaaaaattgagaaaaa 12124012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 23456621 - 23456533
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattat 135  Q
    ||||||||| ||||||||||||| ||||||||| ||||||||  |||| |||||||||| |||| ||||||||   |||| |||||||||||    
T  23456621 ttgaaaagaaacaagtttgcaagcgacaaacttttgaaaataaagttctggaatccaccggaaactgagaaaa---ctctttgaaatattat 23456533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 15129462 - 15129373
Alignment:
Q  17 cgtaggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaa 107  Q
    ||||||||| ||| |||||||| |   | ||||||| ||||||| ||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  15129462 cgtaggctagcaagcgctaaacctagatagaaaaga-acaagttcgcaagcgacaaacttgtgaaaatagggttccagaatcaaccagaaa 15129373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 28737872 - 28737794
Alignment:
Q  56 aagtttgcaagggacaaa-cttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||||||| |||||| ||||||||||||| ||| | ||||||| |||||||||||||||   |||||| ||||||||||    
T  28737872 aagtttgcaagagacaaaacttgtgaaaatagagtttcagaatccaacagaaattgagaaaa---ctctctaaaatattatt 28737794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 33655666 - 33655628
Alignment:
Q  52 atacaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  33655666 atacaagtttgcaagcgacaaacttgtgaaaatagggtt 33655628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 22011472 - 22011436
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||| |||||||||||||||||||||||    
T  22011472 acaagtttgcaagtgacaaacttgtgaaaatagggtt 22011436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 27952371 - 27952407
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||| |||||||||||||||||||||||    
T  27952371 acaagtttgcaagcgacaaacttgtgaaaatagggtt 27952407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 32163814 - 32163886
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||| | ||||||| ||| | |||||||||||||||| |||| |||||||||  | ||||||||||||    
T  32163814 ttgaaaagaaataagtttgtaagcgtcaaacttgtgaaaatatggtttcggaatccatgataaattgagaaaa 32163886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 121
Target Start/End: Complemental strand, 8294610 - 8294548
Alignment:
Q  58 gtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactct 121  Q
    ||||||||| ||||||||||| ||||||| ||| |  ||||||||||||||||| |||||||||    
T  8294610 gtttgcaagcgacaaacttgtaaaaatagtgtttcataatccaccagaaattga-aaaaactct 8294548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 34018057 - 34018103
Alignment:
Q  313 cctagtagttagaattcacattataaggtgaattaagtggggtgtccg 360  Q
    |||||| |||||||||||| |||||||||||| |||||||||||||||    
T  34018057 cctagtggttagaattcaccttataaggtgaa-taagtggggtgtccg 34018103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 18945991 - 18945941
Alignment:
Q  59 tttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaatt 109  Q
    |||||||| ||||||||||||| || || |||||||||| |||||||||||    
T  18945991 tttgcaagcgacaaacttgtgagaacagagttccggaattcaccagaaatt 18945941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 115
Target Start/End: Complemental strand, 25458261 - 25458215
Alignment:
Q  69 acaaacttgtgaaaatagggttccggaatccaccagaaattgagaaa 115  Q
    |||||||||||||||||||||| ||  |||||| |||||||||||||    
T  25458261 acaaacttgtgaaaatagggttgcgatatccactagaaattgagaaa 25458215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 113
Target Start/End: Complemental strand, 31636338 - 31636284
Alignment:
Q  60 ttgcaagggacaaacttgtgaaaata-gggttccggaatccaccagaaattgaga 113  Q
    ||||||| ||||||| | | |||||| ||||||||||||||||||||||||||||    
T  31636338 ttgcaagcgacaaacctatcaaaataagggttccggaatccaccagaaattgaga 31636284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 492638 - 492522
Alignment:
Q  19 taggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaac 118  Q
    ||||||| ||| ||||||| ||   ||||||||| ||||||||||||| |||||||||||||| |||||||| ||||||| |||||||||| ||||||||    
T  492638 taggctagcaagcgctaaatttagattgaaaagaaacaagtttgcaagcgacaaacttgtgaagatagggtttcggaatcaaccagaaattaagaaaaac 492539  T
Q  119 tctctctgaaatattatta 137  Q
    |  ||||||||||||||||    
T  492538 t--ctctgaaatattatta 492522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 19497357 - 19497426
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||| || ||||||||||||| |||||    
T  19497357 acaagtttgcaagcgacaaacttgtgaaaatagggttccgaaatccatcaaaaattgagaaaaaatctct 19497426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 26140379 - 26140300
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||| ||||||| ||||||||| ||||||||||||||  |||||||||| ||||||||||||   |||||| ||||||||||    
T  26140379 acaagattgcaagcgacaaacttatgaaaatagggttcaagaatccaccaaaaattgagaaaa---ctctctaaaatattatt 26140300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 18252452 - 18252390
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||||||| ||||||| ||||||||||||||||   ||||||| ||||||||||||||    
T  18252452 acaagtttgcaagcgacaaacctgtgaaaatagggttctataatccactagaaattgagaaaa 18252390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 97
Target Start/End: Original strand, 9868448 - 9868501
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaat 97  Q
    ||||||||| |||||||| ||||  |||||||||||||||||||||||||||||    
T  9868448 ttgaaaagaaacaagtttacaagcaacaaacttgtgaaaatagggttccggaat 9868501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 8456422 - 8456483
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccaga 105  Q
    ||||||||| ||||||| ||||| ||| ||||||| |||||||| ||||| |||||||||||    
T  8456422 ttgaaaagaaacaagttcgcaagcgacgaacttgtaaaaataggattccgaaatccaccaga 8456483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 21849018 - 21849054
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||| |||||||||||||||||||||||    
T  21849018 acaagtttgcaagcgacaaacttgtgaaaatagggtt 21849054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 22440886 - 22440832
Alignment:
Q  62 gcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||| ||||||||| ||| ||||||||||| |||||||| ||||||| ||||||    
T  22440886 gcaagcgacaaacttatgataatagggttccagaatccactagaaattaagaaaa 22440832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 317 - 358
Target Start/End: Original strand, 4216806 - 4216846
Alignment:
Q  317 gtagttagaattcacattataaggtgaattaagtggggtgtc 358  Q
    ||||||||||||||| |||||||||||| |||||||||||||    
T  4216806 gtagttagaattcaccttataaggtgaa-taagtggggtgtc 4216846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 360
Target Start/End: Complemental strand, 30403856 - 30403812
Alignment:
Q  315 tagtagttagaattcacattataaggtgaattaagtggggtgtccg 360  Q
    |||| |||||||||||| |||||||||||| |||||||||||||||    
T  30403856 tagtggttagaattcaccttataaggtgaa-taagtggggtgtccg 30403812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 358
Target Start/End: Complemental strand, 33729886 - 33729842
Alignment:
Q  313 cctagtagttagaattcacattataaggtgaattaagtggggtgtc 358  Q
    |||||| |||||||||||| |||||||||||| |||||||||||||    
T  33729886 cctagtggttagaattcaccttataaggtgaa-taagtggggtgtc 33729842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 40778839 - 40778875
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  40778839 acaagtttgcaagcgacaaacttgtaaaaatagggtt 40778875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 10494947 - 10494860
Alignment:
Q  46 gaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||| ||||||||||||| ||||||| ||||||||||| |||||||||| ||||||||||||||||||   |||||| ||||||||||    
T  10494947 gaaaagaaacaagtttgcaagtgacaaacctgtgaaaatagagttccggaattcaccagaaattgagaaaa---ctctctaaaatattatt 10494860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 40206191 - 40206116
Alignment:
Q  48 aaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    ||||| ||||||| ||||| ||||||||||||||||||| ||| |||||| ||||||||||||||||||| |||||    
T  40206191 aaagagacaagttcgcaagcgacaaacttgtgaaaatagtgtttcggaattcaccagaaattgagaaaaattctct 40206116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 44 - 136
Target Start/End: Original strand, 13991422 - 13991511
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||||| ||||||||||||| ||||||| || ||||||| ||||| |||||||||||||| |||||||||   |||||| ||||||||||    
T  13991422 ttgaaaagaaacaagtttgcaagcgacaaacatgcgaaaataaggttctggaatccaccagaatttgagaaaa---ctctctaaaatattatt 13991511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 13990730 - 13990798
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    |||||||||||||  ||||||||||||||||||||||| |||||||| |||||||||| |||||||||||    
T  13990730 acaagtttgcaagtaacaaacttgtgaaaatagggttctggaatccatcagaaattga-aaaaactctct 13990798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 18689564 - 18689636
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||| | ||||||||| | ||||||||||| ||||||||||| | |||||||||||||||||||||||    
T  18689564 ttgaaaagaaaaaagtttgcatgcgacaaacttgtaaaaatagggttgcagaatccaccagaaattgagaaaa 18689636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 38888033 - 38888105
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||| | |||| |||||||| ||||||||||||||||||||||| |||||||||  ||||||||||||||    
T  38888033 ttgaaaataaacaaatttgcaagcgacaaacttgtgaaaatagggtttcggaatccattagaaattgagaaaa 38888105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 7634126 - 7634037
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||||  ||||||||||||  || ||||||||| |||||| |||| ||||||||||||||||||||||||   |||||| ||||||||||    
T  7634126 ttgaaaaggaacaagtttgcaaacgataaacttgtggaaatagagttctggaatccaccagaaattgagaaaa---ctctctaaaatattatt 7634037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 7724120 - 7724189
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    |||||||||  ||||||||| || ||||||||   ||||||||||||||||||||||||||||||||||||||    
T  7724120 ttgaaaagaagcaagtttgcgagcgacaaact---gaaaatagggttccggaatccaccagaaattgagaaaa 7724189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 116
Target Start/End: Complemental strand, 9260609 - 9260547
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||||||  |||||||||| |||||||||||| | |||||||||||||||||||||||    
T  9260609 acaagtttgcaaacgacaaacttgcgaaaatagggtttcagaatccaccagaaattgagaaaa 9260547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 22486830 - 22486905
Alignment:
Q  55 caagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattat 135  Q
    |||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||   |||||||||| |||||    
T  22486830 caagtttgcaagcgacaa-cttgtgaaaatagg-ttccggaatccaccagaaattgagaaaa---ctctctgaaacattat 22486905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 54700614 - 54700687
Alignment:
Q  18 gtaggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttc 91  Q
    |||||||| |||||||||||| |   ||||||||| ||||||||||||| ||||||||||||| ||||||||||    
T  54700614 gtaggctagcaaacgctaaacctatattgaaaagaaacaagtttgcaagtgacaaacttgtgagaatagggttc 54700687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 15848450 - 15848379
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||| ||||||| ||||| |||||| ||||||||| || |||||| ||||||||| ||||||||||||    
T  15848450 ttgaaaagaaacaagtt-gcaagtgacaaaattgtgaaaagagagttccgaaatccaccaaaaattgagaaaa 15848379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 18657085 - 18657157
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||| | ||||||||| | ||||||||||| |||||||| || | ||||||||| |||||||||||||    
T  18657085 ttgaaaagaaaaaagtttgcatgcgacaaacttgtaaaaataggatttcagaatccaccggaaattgagaaaa 18657157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 17254899 - 17254998
Alignment:
Q  17 cgtaggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||| ||||||||||||||   ||||| |   |||| ||| |||| ||||||||||||||||||| |||| | ||||| | ||||||||||||||    
T  17254899 cgtaggctagcaaacgctaaacttagattgaagatgaacaaattttcaagcgacaaacttgtgaaaatagagttctgaaatcccctagaaattgagaaaa 17254998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 107
Target Start/End: Complemental strand, 24667678 - 24667640
Alignment:
Q  69 acaaacttgtgaaaatagggttccggaatccaccagaaa 107  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  24667678 acaaacttgtgaaaatagggttccggaatccactagaaa 24667640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 6659383 - 6659419
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||| |||||||||||||||||||||||    
T  6659383 acaagtttgcaagcgacaaacttgtgaaaatagggtt 6659419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 7723706 - 7723753
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttcc 92  Q
    ||||||||| |||||||||||||  ||||||||||||||||||||||||    
T  7723706 ttgaaaaga-acaagtttgcaagctacaaacttgtgaaaatagggttcc 7723753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 123
Target Start/End: Complemental strand, 19935518 - 19935454
Alignment:
Q  59 tttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    |||||||| ||||||||| |||||||||||||  ||||| || || ||||||||||||| |||||    
T  19935518 tttgcaagcgacaaacttatgaaaatagggttatggaattcatcaaaaattgagaaaaattctct 19935454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 22478727 - 22478773
Alignment:
Q  313 cctagtagttagaattcacattataaggtgaattaagtggggtgtccg 360  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||||||    
T  22478727 cctagtagttagaattcaccttataaggtgaa-taaatggggtgtccg 22478773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 360
Target Start/End: Original strand, 28221294 - 28221340
Alignment:
Q  313 cctagtagttagaattcacattataaggtgaattaagtggggtgtccg 360  Q
    |||||| |||||||||||| |||||||||||| |||||||||||||||    
T  28221294 cctagtggttagaattcaccttataaggtgaa-taagtggggtgtccg 28221340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 21433624 - 21433678
Alignment:
Q  62 gcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||| ||||||||| ||||||||||||||| |||| || || ||||||||||||    
T  21433624 gcaagcgacaaacttatgaaaatagggttccagaattcatcataaattgagaaaa 21433678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 53477267 - 53477329
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    |||||||| |||| | ||||| ||||||||| |||||   |||||||||||||||||||||||    
T  53477267 acaagtttacaagcgtcaaacctgtgaaaatggggttttagaatccaccagaaattgagaaaa 53477329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 360
Target Start/End: Complemental strand, 12856290 - 12856246
Alignment:
Q  315 tagtagttagaattcacattataaggtgaattaagtggggtgtccg 360  Q
    |||| |||||||||||| |||||||||||| |||||||||||||||    
T  12856290 tagtggttagaattcaccttataaggtgaa-taagtggggtgtccg 12856246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 50519224 - 50519260
Alignment:
Q  80 aaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    |||||||||||| ||||||||| ||||||||||||||    
T  50519224 aaaatagggttctggaatccactagaaattgagaaaa 50519260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 18468685 - 18468626
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgaga 113  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18468685 acaagcttgcaagcgacaaacttgtgaaaatagggttccggaatccaccagaaattgaga 18468626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 14130209 - 14130139
Alignment:
Q  46 gaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||| ||||||||||||| || ||| ||||||||||| ||||||||||||||||||||||||||||||    
T  14130209 gaaaagagacaagtttgcaagcgataaatttgtgaaaataaggttccggaatccaccagaaattgagaaaa 14130139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 2189738 - 2189837
Alignment:
Q  17 cgtaggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||| ||| |||||||| ||  ||||||||| ||||||||||||| |||||||||||||||||| ||||  ||||||||||| ||| ||||||||    
T  2189738 cgtaggctagcaagcgctaaacctcgattgaaaaga-acaagtttgcaagcgacaaacttgtgaaaataaggttttggaatccaccaaaaaatgagaaaa 2189836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 2687778 - 2687699
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||||||||| ||||||||||||||||||||||||  |||||||| ||||||||||||||   |||| ||||||||||||    
T  2687778 acaagtttgcaagcgacaaacttgtgaaaatagggttctagaatccacaagaaattgagaaaa---ctctttgaaatattatt 2687699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 20693845 - 20693773
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||| | ||||||||||||| |||||| ||||||||||| |||||||||||||| |||||||||||||||    
T  20693845 ttgaaaataaacaagtttgcaagcgacaaatttgtgaaaatatggttccggaatccatcagaaattgagaaaa 20693773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 2689192 - 2689104
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||||| ||||||||||||| ||||||  ||||||||||||||||||| ||||| |||||||||||||||   ||||||||||| |||||    
T  2689192 ttgaaaagaaacaagtttgcaagcgacaaaactgtgaaaatagggttccggcatcca-cagaaattgagaaaa---ctctctgaaattttatt 2689104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 2609543 - 2609627
Alignment:
Q  49 aagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    |||| ||||||||||||| ||||||||||||||||||||||| | |||| ||||||||||||| |||    |||||||||||||||||    
T  2609543 aagaaacaagtttgcaagtgacaaacttgtgaaaatagggttacagaattcaccagaaattgataaa---gctctctgaaatattatt 2609627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 24731105 - 24730989
Alignment:
Q  17 cgtaggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||| ||| ||||||| ||   ||||||||  |||||||||||||  ||||||||||||||||||| || ||||||||| || ||||||||||||    
T  24731105 cgtaggctagcaagcgctaaatttagattgaaaaggaacaagtttgcaagcaacaaacttgtgaaaataggatttcggaatccatcaaaaattgagaaaa 24731006  T
Q  117 actctctctgaaatattatt 136  Q
       |||||| ||||||||||    
T  24731005 ---ctctctaaaatattatt 24730989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 24577554 - 24577660
Alignment:
Q  27 caaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctg 126  Q
    |||||| |||||||   ||||| ||| ||||||||||||  ||||||| ||||||||| ||||| || ||||||||||||||||||||||   ||||||     
T  24577554 caaacgataaacttatattgaagagagacaagtttgcaaatgacaaacatgtgaaaatggggtttcgtaatccaccagaaattgagaaaa---ctctcta 24577650  T
Q  127 aaatattatt 136  Q
    ||||||||||    
T  24577651 aaatattatt 24577660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 24731300 - 24731201
Alignment:
Q  17 cgtaggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||| ||| |||||||| |   ||||||||  |||||||||||||  |||||||||||||||||| ||| |||||| || |||||||||||||||    
T  24731300 cgtaggctagcaagcgctaaacctagattgaaaaggaacaagtttgcaagcaacaaacttgtgaaaatagagtttcggaattcatcagaaattgagaaaa 24731201  T

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Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 26374945 - 26374874
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||||| ||||||| ||||| ||||||||||| ||||||||||| || ||||||||||||||| ||||||    
T  26374945 ttgaaaaga-acaagttcgcaagcgacaaacttgtaaaaatagggtttcgaaatccaccagaaattaagaaaa 26374874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 2188397 - 2188475
Alignment:
Q  57 agtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    |||||||||| |||||| |||| |||||||||||| | ||||||||||||||| |||||||  |||||| ||||||||||    
T  2188397 agtttgcaagcgacaaaattgtaaaaatagggttctgaaatccaccagaaattaagaaaaa-actctctaaaatattatt 2188475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 136
Target Start/End: Complemental strand, 16598291 - 16598205
Alignment:
Q  48 aaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccag-aaattgagaaaaactctctctgaaatattatt 136  Q
    ||||| ||||||||||| | |||||||||||||||||||||||||  ||| |||||| ||||||||||||   |||||| ||||||||||    
T  16598291 aaagaaacaagtttgcacgcgacaaacttgtgaaaatagggttccaaaatacaccagtaaattgagaaaa---ctctctaaaatattatt 16598205  T

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Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 25479451 - 25479537
Alignment:
Q  47 aaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    |||||| ||||| ||||||| ||||||  | |||||||| |||||||||||||||||||| |||||||||   ||||||||||| |||||    
T  25479451 aaaagaaacaaggttgcaagtgacaaatctttgaaaataaggttccggaatccaccagaatttgagaaaa---ctctctgaaattttatt 25479537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 24578822 - 24578909
Alignment:
Q  46 gaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||| ||||||||||||| |  |||  |||||||||||||||| ||||||||| |||||||| |||||   |||||| ||||||||||    
T  24578822 gaaaagaaacaagtttgcaagcggtaaatctgtgaaaatagggttctggaatccactagaaattgtgaaaa---ctctctaaaatattatt 24578909  T

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Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 16598183 - 16598123
Alignment:
Q  73 acttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||||||||||||||||| ||| ||||||||| ||||||||   |||||| ||||||||||    
T  16598183 acttgtgaaaatagggttccgaaatacaccagaaactgagaaaa---ctctctaaaatattatt 16598123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 22512099 - 22512135
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||| |||||||||||||||||||||||    
T  22512099 acaagtttgcaagcgacaaacttgtgaaaatagggtt 22512135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 22519399 - 22519435
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||| |||||||||||||||||||||||    
T  22519399 acaagtttgcaagcgacaaacttgtgaaaatagggtt 22519435  T

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Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 22926701 - 22926737
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||| |||||||||||||||||||||||    
T  22926701 acaagtttgcaagcgacaaacttgtgaaaatagggtt 22926737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 90
Target Start/End: Original strand, 42891717 - 42891753
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||| |||||||||||||||||||||||    
T  42891717 acaagtttgcaagcgacaaacttgtgaaaatagggtt 42891753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 42890464 - 42890394
Alignment:
Q  17 cgtaggctatcaaacgctaaacttccgttgaaaagatacaagtttgcaagggacaaacttgtgaaaataggg 88  Q
    ||||||||| ||| |||||||| |   | ||||||| ||||||||||||| |||||||||||||||||||||    
T  42890464 cgtaggctagcaagcgctaaacctagatagaaaaga-acaagtttgcaagcgacaaacttgtgaaaataggg 42890394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 90
Target Start/End: Original strand, 22921905 - 22921939
Alignment:
Q  56 aagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||| |||||||||||||||||||||||    
T  22921905 aagtttgcaagcgacaaacttgtgaaaatagggtt 22921939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 37189867 - 37189809
Alignment:
Q  60 ttgcaagggacaaacttgtgaaaata-gggttccggaatccaccagaaattgagaaaaa 117  Q
    ||||||| ||||||| | | |||||| |||||||| |||||||||||||||||||||||    
T  37189867 ttgcaagcgacaaacctatcaaaataagggttccgaaatccaccagaaattgagaaaaa 37189809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 90
Target Start/End: Complemental strand, 37189900 - 37189866
Alignment:
Q  56 aagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||| |||||||||||||||||||||||    
T  37189900 aagtttgcaagcgacaaacttgtgaaaatagggtt 37189866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 358
Target Start/End: Original strand, 43874959 - 43875008
Alignment:
Q  308 agtaccctagtagttagaattcacattataaggtgaattaagtggggtgtc 358  Q
    |||| |||||| |||||||||||| |||||||||||| |||||||||||||    
T  43874959 agtagcctagttgttagaattcaccttataaggtgaa-taagtggggtgtc 43875008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 360
Target Start/End: Original strand, 15042354 - 15042398
Alignment:
Q  315 tagtagttagaattcacattataaggtgaattaagtggggtgtccg 360  Q
    |||| |||||||||||| |||||||||||| |||||||||||||||    
T  15042354 tagtggttagaattcaccttataaggtgaa-taagtggggtgtccg 15042398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 359
Target Start/End: Original strand, 5184876 - 5184919
Alignment:
Q  315 tagtagttagaattcacattataaggtgaattaagtggggtgtcc 359  Q
    |||| |||||||||||| |||||||||||| ||||||||||||||    
T  5184876 tagtggttagaattcaccttataaggtgaa-taagtggggtgtcc 5184919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 22520845 - 22520888
Alignment:
Q  46 gaaaagatacaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    |||||||| |||||||||||| |||||| ||||||||||||||||    
T  22520845 gaaaagat-caagtttgcaagcgacaaatttgtgaaaatagggtt 22520888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 23570620 - 23570584
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  23570620 acaagtttgcaagcgacaaacttgtgaaaataaggtt 23570584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 23573619 - 23573583
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggtt 90  Q
    |||||||| |||| |||||||||||||||||||||||    
T  23573619 acaagtttacaagcgacaaacttgtgaaaatagggtt 23573583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 9719 - 9659
Alignment:
Q  73 acttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    ||||||||||||||||||||| ||||||||||||||||||||||   |||||||||||||||||    
T  9719 acttgtgaaaatagggttccgaaatccaccagaaattgagaaaa---ctctctgaaatattatt 9659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 1700 - 1629
Alignment:
Q  48 aaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaact 119  Q
    ||||| ||||||||||||  ||||||||||| |||||| ||||| |||||||||||||| ||||||||||||    
T  1700 aaagaaacaagtttgcaaacgacaaacttgtcaaaatatggttctggaatccaccagaatttgagaaaaact 1629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 14881 - 14820
Alignment:
Q  56 aagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaa 117  Q
    ||||| ||||| || |||||||||||||||||  |||||||||||||| ||||||| |||||    
T  14881 aagttggcaagcgaaaaacttgtgaaaataggaatccggaatccaccaaaaattgaaaaaaa 14820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 119
Target Start/End: Original strand, 14374 - 14415
Alignment:
Q  78 tgaaaatagggttccggaatccaccagaaattgagaaaaact 119  Q
    ||||||||||  |||||||||||||| |||||||||||||||    
T  14374 tgaaaataggaatccggaatccaccaaaaattgagaaaaact 14415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 119
Target Start/End: Complemental strand, 17682 - 17611
Alignment:
Q  48 aaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaact 119  Q
    ||||| ||||||||||||  ||||||||||| |||||| ||||| |||||||||| ||| ||||||||||||    
T  17682 aaagaaacaagtttgcaaacgacaaacttgtcaaaatatggttctggaatccacctgaatttgagaaaaact 17611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 145769 - 145707
Alignment:
Q  55 caagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaa 117  Q
    |||||||||||| ||||| ||||| ||||||||||||  |||||||||| |||||||||||||    
T  145769 caagtttgcaagcgacaagcttgtaaaaatagggttctagaatccaccaaaaattgagaaaaa 145707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 143974 - 144049
Alignment:
Q  55 caagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctctgaaatattatt 136  Q
    |||||||||||| || ||| ||||||||||||| ||||||||||||||   |||||||||||   |||||| ||||||||||    
T  143974 caagtttgcaagcgaaaaatttgtgaaaataggtttccggaatccacc---aattgagaaaa---ctctctaaaatattatt 144049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 108
Target Start/End: Complemental strand, 49358 - 49304
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaat 108  Q
    ||||||||||||| ||||||||| |||||||||||||||  ||||||||| ||||    
T  49358 acaagtttgcaagcgacaaacttatgaaaatagggttccaaaatccaccataaat 49304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 37756 - 37680
Alignment:
Q  44 ttgaaaagatacaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctct 123  Q
    ||||||||| ||||||||||||| ||||||||| |||||||| ||||||  |||| |||||||||| || ||||||||||    
T  37756 ttgaaaaga-acaagtttgcaagcgacaaacttatgaaaata-ggttccaaaatcgaccagaaatt-aggaaaactctct 37680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 15135 - 15179
Alignment:
Q  72 aacttgtgaaaatagggttccggaatccaccagaaattgagaaaa 116  Q
    ||||||| ||||||||||||  |||||||||||||||||||||||    
T  15135 aacttgtaaaaatagggttctagaatccaccagaaattgagaaaa 15179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 46786 - 46855
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaat-agggttccggaatccaccagaaattgagaaaaactctc 122  Q
    ||||||||||||| ||||||| | | ||||| | ||||||||||||||||| ||||||||| ||| ||||    
T  46786 acaagtttgcaagcgacaaacctatcaaaattaaggttccggaatccaccaaaaattgagagaaaatctc 46855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 14178 - 14238
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaa 114  Q
    ||||||||||||| || ||| |||||||||||| |||  |||||||| || ||||||||||    
T  14178 acaagtttgcaagcgataaatttgtgaaaatagtgttttggaatccatcaaaaattgagaa 14238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 114
Target Start/End: Complemental strand, 58666 - 58606
Alignment:
Q  54 acaagtttgcaagggacaaacttgtgaaaatagggttccggaatccaccagaaattgagaa 114  Q
    ||||||||||||| || ||| |||||||||||| |||  |||||||| || ||||||||||    
T  58666 acaagtttgcaagcgataaatttgtgaaaatagtgttttggaatccatcaaaaattgagaa 58606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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