View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18290_high_9 (Length: 333)

Name: NF18290_high_9
Description: NF18290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18290_high_9
NF18290_high_9
[»] chr1 (5 HSPs)
chr1 (62-323)||(41959262-41959514)
chr1 (1-99)||(3943206-3943300)
chr1 (1-99)||(9588816-9588910)
chr1 (1-99)||(13984804-13984898)
chr1 (1-57)||(41959224-41959276)
[»] chr2 (2 HSPs)
chr2 (91-230)||(34223082-34223221)
chr2 (236-311)||(34222920-34222995)
[»] chr8 (7 HSPs)
chr8 (1-99)||(40486266-40486360)
chr8 (236-311)||(41306685-41306760)
chr8 (1-99)||(8697711-8697805)
chr8 (1-99)||(10646738-10646832)
chr8 (1-99)||(45278514-45278608)
chr8 (19-99)||(41307774-41307854)
chr8 (186-230)||(41306848-41306892)
[»] chr7 (2 HSPs)
chr7 (1-99)||(2911361-2911455)
chr7 (1-99)||(25059946-25060040)
[»] chr3 (6 HSPs)
chr3 (1-99)||(12094728-12094822)
chr3 (1-98)||(44277269-44277362)
chr3 (1-99)||(19911694-19911788)
chr3 (1-95)||(40931768-40931857)
chr3 (1-54)||(19911655-19911704)
chr3 (1-52)||(38805397-38805444)


Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 62 - 323
Target Start/End: Original strand, 41959262 - 41959514
Alignment:
Q  62 caatatcaatacatatggttcatctagtaaatcacattcatattttaatccaaatactagtgtcatgctttgtttttcaaacattctattattccataat 161  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41959262 caataccaatacatatggttcatctagtaaatcacattcatattttaatccaaatactagtgtcatgctttgtttttcaaacattccattattccataat 41959361  T
Q  162 aatctcacgtgcacctacaaaacttctcatcattgctatctccctcgtatgcttactctcatgattacttctcatctgcaacactgtttaatggaacaac 261  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||    
T  41959362 aatctcacgtgcacctacaaaacttctcatcattgctatctccctcgtatgcttactctcatgat---------tctgcaacactgtttaatggaacaac 41959452  T
Q  262 ttattcaaattttatgcagagttcaatccctttccttcttccattataatccctttcctttg 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41959453 ttattcaaattttatgcagagttcaatccctttccttcttccattataatccctttcctttg 41959514  T

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Target: chr1; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 3943206 - 3943300
Alignment:
Q  1 aataccaataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt 99  Q
    ||||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  3943206 aataccaataccaaaatt----aattaaattcaatcatccttcaataccaatacatactggcaataccaatacatatggttcatctagtaaatcacatt 3943300  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 9588816 - 9588910
Alignment:
Q  1 aataccaataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt 99  Q
    ||||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  9588816 aataccaataccaaaatt----aattaaattcaatcatccttcaataccaatacatactggcaataccaatacatatggttcatctagtaaatcacatt 9588910  T

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Target: chr1; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 13984898 - 13984804
Alignment:
Q  1 aataccaataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt 99  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  13984898 aataccaataccaaaattaattaa----attcaatcatccttcaataccaatacatactggcaataccaatacatatggttcatctagtaaatcacatt 13984804  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 41959224 - 41959276
Alignment:
Q  1 aataccaataccaaaattaattaattaaattcaatcatccttcaataccaatacata 57  Q
    ||||||||||||||||||    |||||||||||||||||||||||||||||||||||    
T  41959224 aataccaataccaaaatt----aattaaattcaatcatccttcaataccaatacata 41959276  T

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Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 34223221 - 34223082
Alignment:
Q  91 aatcacattcatattttaatccaaatactagtgtcatgctttgtttttcaaacattctattattccataataatctcacgtgcacctacaaaacttctca 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34223221 aatcacattcatattttaatccaaatactagtgtcatgctttgtttttcaaacattccattattccataataatctcacgtgcacctacaaaacttctca 34223122  T
Q  191 tcattgctatctccctcgtatgcttactctcatgattact 230  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34223121 tcattgctatctccctcgtatgcttactctcatgattact 34223082  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 236 - 311
Target Start/End: Complemental strand, 34222995 - 34222920
Alignment:
Q  236 tctgcaacactgtttaatggaacaacttattcaaattttatgcagagttcaatccctttccttcttccattataat 311  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34222995 tctgcaacgctgtttaatggaacaacttattcaaattttatgcagagttcaatccctttccttcttccattataat 34222920  T

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Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 40486360 - 40486266
Alignment:
Q  1 aataccaataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt 99  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  40486360 aataccaataccaaaattaattaa----attcaatcatccttcaataccaatacatactggcaataccaatacatatggttcatctagtaaatcacatt 40486266  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 236 - 311
Target Start/End: Complemental strand, 41306760 - 41306685
Alignment:
Q  236 tctgcaacactgtttaatggaacaacttattcaaattttatgcagagttcaatccctttccttcttccattataat 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41306760 tctgcaacactgtttaatggaacaacttattcaaattttatgcagagtttaatccctttccttcttccattataat 41306685  T

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Target: chr8; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 8697805 - 8697711
Alignment:
Q  1 aataccaataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt 99  Q
    ||||||||||||||||||||||||    ||||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||    
T  8697805 aataccaataccaaaattaattaa----attcaatcatccttcaataccaatatatactggcaataccaatacatatggttcatctagtaaatcacatt 8697711  T

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Target: chr8; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 10646738 - 10646832
Alignment:
Q  1 aataccaataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt 99  Q
    ||||||||||||||||||    ||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  10646738 aataccaataccaaaatt----aattaaattgaatcatccttcaataccaatacatactggcaataccaatacatatggttcatctagtaaatcacatt 10646832  T

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Target: chr8; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 45278608 - 45278514
Alignment:
Q  1 aataccaataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt 99  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||    
T  45278608 aataccaataccaaaattaattaa----attcaatcatccttcaataccaatacatattggcaataccaatacatatggttcatctagtaaatcacatt 45278514  T

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Target: chr8; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 41307854 - 41307774
Alignment:
Q  19 aattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt 99  Q
    |||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||    
T  41307854 aattaattaaattcaatcatccttcaataccaatacatactgacaataccaatacatatggttcatctagtaaatcacatt 41307774  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 41306892 - 41306848
Alignment:
Q  186 tctcatcattgctatctccctcgtatgcttactctcatgattact 230  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  41306892 tctcatcattgctatctccctcgtatgcttactctcatgattact 41306848  T

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Target: chr7 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 2911455 - 2911361
Alignment:
Q  1 aataccaataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt 99  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||    
T  2911455 aataccaataccaaaattaattaa----attcaatcatccttcaataccaatacatactggcaataccaatacatatggttcatctagtaaatcacatt 2911361  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 25060040 - 25059946
Alignment:
Q  1 aataccaataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt 99  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||    
T  25060040 aataccaataccaaaattaattaa----attcaatcatccttcaataccaatacatactgacaataccaatacatatggttcatctagtaaatcacatt 25059946  T

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Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 12094728 - 12094822
Alignment:
Q  1 aataccaataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt 99  Q
    ||||||||||||||||||    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  12094728 aataccaataccaaaatt----aattaaattcaatcatccttcaataccaatacataccgacaataccaatacatatggttcatctagtaaatcacatt 12094822  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 44277362 - 44277269
Alignment:
Q  1 aataccaataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacat 98  Q
    ||||||||||||||||||||||||    |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  44277362 aataccaataccaaaattaattaa----attcaatcatccttcaataccaatacatactggcaataccaatacatatggttcatctagtaaatcacat 44277269  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 19911694 - 19911788
Alignment:
Q  1 aataccaataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatcacatt 99  Q
    ||||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||    
T  19911694 aataccaataccaaaatt----aattaaattcaatcatccttcaataccaatacatactggcaataccaatacatatggttcatctattaaatcacatt 19911788  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 40931768 - 40931857
Alignment:
Q  1 aataccaataccaaaattaattaattaaattcaatcatccttcaataccaatacataccggcaatatcaatacatatggttcatctagtaaatca 95  Q
    ||||||||||||||||||||||||    | ||||| ||||||||||||| |||||||  | ||||| ||||||||| ||||||||||||||||||    
T  40931768 aataccaataccaaaattaattaa----agtcaat-atccttcaataccgatacatagtgacaataccaatacatacggttcatctagtaaatca 40931857  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 19911655 - 19911704
Alignment:
Q  1 aataccaataccaaaattaattaattaaattcaatcatccttcaataccaatac 54  Q
    ||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  19911655 aataccaataccaaaatt----aattaaattcaatcatccttcaataccaatac 19911704  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 38805397 - 38805444
Alignment:
Q  1 aataccaataccaaaattaattaattaaattcaatcatccttcaataccaat 52  Q
    ||||||||||||||||||    ||||||||||||||||||||||||||||||    
T  38805397 aataccaataccaaaatt----aattaaattcaatcatccttcaataccaat 38805444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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