View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18290_low_15 (Length: 278)

Name: NF18290_low_15
Description: NF18290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18290_low_15
NF18290_low_15
[»] scaffold0471 (1 HSPs)
scaffold0471 (1-33)||(11597-11629)
[»] chr6 (1 HSPs)
chr6 (1-33)||(9306235-9306267)
[»] chr4 (2 HSPs)
chr4 (1-33)||(24126994-24127026)
chr4 (1-33)||(24685923-24685955)
[»] chr2 (1 HSPs)
chr2 (1-33)||(25649213-25649245)
[»] chr1 (1 HSPs)
chr1 (1-33)||(49383621-49383653)


Alignment Details
Target: scaffold0471 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 11629 - 11597
Alignment:
Q  1 aaatggaatcaaatcaaacaacaaatttaggtt 33  Q
    |||||||||||||||||||||||||||||||||    
T  11629 aaatggaatcaaatcaaacaacaaatttaggtt 11597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 9306235 - 9306267
Alignment:
Q  1 aaatggaatcaaatcaaacaacaaatttaggtt 33  Q
    |||||||||||||||||||||||||||||||||    
T  9306235 aaatggaatcaaatcaaacaacaaatttaggtt 9306267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 24127026 - 24126994
Alignment:
Q  1 aaatggaatcaaatcaaacaacaaatttaggtt 33  Q
    |||||||||||||||||||||||||||||||||    
T  24127026 aaatggaatcaaatcaaacaacaaatttaggtt 24126994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 24685955 - 24685923
Alignment:
Q  1 aaatggaatcaaatcaaacaacaaatttaggtt 33  Q
    |||||||||||||||||||||||||||||||||    
T  24685955 aaatggaatcaaatcaaacaacaaatttaggtt 24685923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25649213 - 25649245
Alignment:
Q  1 aaatggaatcaaatcaaacaacaaatttaggtt 33  Q
    |||||||||||||||||||||||||||||||||    
T  25649213 aaatggaatcaaatcaaacaacaaatttaggtt 25649245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 49383621 - 49383653
Alignment:
Q  1 aaatggaatcaaatcaaacaacaaatttaggtt 33  Q
    |||||||||||||||||||||||||||||||||    
T  49383621 aaatggaatcaaatcaaacaacaaatttaggtt 49383653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University