View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18290_low_16 (Length: 268)
Name: NF18290_low_16
Description: NF18290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18290_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 3 - 258
Target Start/End: Complemental strand, 7581120 - 7580864
Alignment:
| Q |
3 |
gttttgcataatgttacttgatatggttccttttccttttctttgcaaggatcgaaatccttcaacattttattgttgaatattccttttaatgcaaagg |
102 |
Q |
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| T |
7581120 |
gttttgcataatgttacttgatatggttccttttccttttctttgcaaggatcgaaatccttcaaccttttattgttgaatattccttttaatgcaaagg |
7581021 |
T |
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| Q |
103 |
cattgtgtgatatatttgatacgtttcatttatatcattgtgacataacttctttatgtcttcttatattgatacaaaaagaatgtatttg-tttgatct |
201 |
Q |
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| T |
7581020 |
cattgtgtgatatatttgatacctttcatttatatcactgtgacataacttctttatgtcttcctatggtgatacaaaaagaatgtatttgttttgatct |
7580921 |
T |
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| Q |
202 |
taatgattcaaatctagaatataacataaacttcatgcttgtcattttgctcctttg |
258 |
Q |
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| T |
7580920 |
taatgattcaaatctataatataacataaacttcatgcttgtcattttgctcctttg |
7580864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 4 - 258
Target Start/End: Original strand, 8980283 - 8980538
Alignment:
| Q |
4 |
ttttgcataatgttacttgatatggttccttttccttttctttgcaaggatcgaaatccttcaacattttattgttgaatattccttttaatgcaaaggc |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
8980283 |
ttttgcataatgttacttgatatggttccttttccttttctttgcaaggatcgaaatctttcaaccttttattgttgaatattccttttaatgcaaaggc |
8980382 |
T |
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| Q |
104 |
attgtgtgatatatttgatacgtttcatttatatcattgtgacataacttctttatgtcttcttatattgatacaaaaagaatgtatttg-tttgatctt |
202 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
8980383 |
attgtgtgatatatttgatacctttcatttatatcactgtgacataacttctttatgtcttcttatggtgatacaaaaagaatgtatttgttttgatctt |
8980482 |
T |
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| Q |
203 |
aatgattcaaatctagaatataacataaacttcatgcttgtcattttgctcctttg |
258 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8980483 |
aatgattcaaatctataatataacataaacttcatgcttgtcattttgctcctttg |
8980538 |
T |
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