View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18290_low_3 (Length: 535)

Name: NF18290_low_3
Description: NF18290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18290_low_3
NF18290_low_3
[»] chr3 (2 HSPs)
chr3 (1-535)||(43489523-43490063)
chr3 (1-63)||(43489440-43489502)


Alignment Details
Target: chr3 (Bit Score: 486; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Original strand, 43489523 - 43490063
Alignment:
Q  1 aaaattacaccagataaaaatggacgatgtagcattgacacttcagacaggtgtat------cagtatcgtgtttggtatccatgtttttgcctctgatt 94  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||      |||||||||||||||||||||||||||||||| |||||    
T  43489523 aaaattacaccagataaaaatggacgatgtagcatcgacacttcagacaggcgtatcagtatcagtatcgtgtttggtatccatgtttttgcctgtgatt 43489622  T
Q  95 cattgaaaattaatcatcaagaaggagaagagctatgatccgaagtagaccaaggtggcaactgagtagaaaaatacgaggaaactgaagtattgccctg 194  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489623 cattgaaaattaatcatcaagaaggagaagagctctgatccgaagtagaccaaggtggcaactgagtagaaaaatacgaggaaactgaagtattgccctg 43489722  T
Q  195 catagaagaaacaaatgcagaagaagatgatgacaaagaagaagctggcgacgatgatgaagattgtagatgagaagccacagaagaagccctaatcaca 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43489723 catagaagaaacaaatgcagaagaagatgatgacaaagaagaagctggcgacgatgatgaagattgtagatgagaagccatagaagaagccctaatcaca 43489822  T
Q  295 ttatcatcataaatattccttggagcaggaatacccgaaaactgaaaacgatcataaaagtttgtcgaatgctgagaagagttaggaaaaggtctagtat 394  Q
    ||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489823 ttatcatcataaacattccttgcaggaggaatacccgaaaactgaaaacgatcataaaagtttgtcgaatgctgagaagagttaggaaaaggtctagtat 43489922  T
Q  395 gaacaacaggatcagtagaagttgtaatagaaacaatcgaactcggtgaattcgaaacgttccattgagtagtagtagtagctggtggagggttacgaag 494  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489923 gaacaacaggatcagtagaagttgtaatagaaacaatcgaactcggtgaattcgaaacgttccattgagtagtagtagtagctggtggagggttacgaag 43490022  T
Q  495 tgtaacattttcagggaaattgagtttggctttgttgcctc 535  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  43490023 tgtaacattttcagggaaattgagtttggctttgttgcctc 43490063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 43489440 - 43489502
Alignment:
Q  1 aaaattacaccagataaaaatggacgatgtagcattgacacttcagacaggtgtatcagtatc 63  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  43489440 aaaattacaccagataaaaatggacgatgtagcattgacacttcggacaggcgtatcagtatc 43489502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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