View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18290_low_4 (Length: 531)

Name: NF18290_low_4
Description: NF18290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18290_low_4
NF18290_low_4
[»] chr3 (2 HSPs)
chr3 (12-514)||(10878705-10879207)
chr3 (197-253)||(15960505-15960561)
[»] scaffold0496 (1 HSPs)
scaffold0496 (12-204)||(10856-11048)
[»] chr2 (1 HSPs)
chr2 (327-428)||(25917343-25917444)
[»] scaffold0412 (1 HSPs)
scaffold0412 (198-297)||(557-656)
[»] chr7 (2 HSPs)
chr7 (169-269)||(13262726-13262826)
chr7 (195-269)||(9064520-9064594)
[»] scaffold0044 (1 HSPs)
scaffold0044 (198-299)||(92267-92368)
[»] chr8 (2 HSPs)
chr8 (438-499)||(20310890-20310951)
chr8 (438-499)||(21097523-21097584)
[»] chr6 (2 HSPs)
chr6 (197-253)||(17446809-17446865)
chr6 (464-504)||(11129932-11129972)
[»] scaffold0711 (1 HSPs)
scaffold0711 (411-508)||(2679-2776)
[»] chr4 (2 HSPs)
chr4 (192-256)||(17527492-17527556)
chr4 (456-494)||(21810781-21810819)
[»] chr1 (3 HSPs)
chr1 (192-269)||(24155117-24155194)
chr1 (473-514)||(27857974-27858015)
chr1 (466-514)||(9345960-9346008)
[»] chr5 (2 HSPs)
chr5 (197-269)||(20966944-20967016)
chr5 (197-268)||(31217699-31217770)


Alignment Details
Target: chr3 (Bit Score: 495; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 12 - 514
Target Start/End: Complemental strand, 10879207 - 10878705
Alignment:
Q  12 gagcacagagattcaaagatggttttggcagaggatttgttgacaatcttcacatattttgagtaaggtatagcttctacaagacttccacgcaccctat 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10879207 gagcacagagattcaaagatggttttggcagaggatttgttgacaatcttcacatattttgagtaaggtatagcttctacaagacttccacgcaccctat 10879108  T
Q  112 gatgctttctgtagatcttcttctcagcctcagtaagactatttctgtcacgtgccattccttctttatcaacagcaatctcaataccatcttcaataat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10879107 gatgctttctgtagatcttcttctcagcctcagtaagactatttctgtcacgtgccattccttctttatcaacagcaatctcaataccatcttcaataat 10879008  T
Q  212 atcccatagttcatcatcaatactcatgatgtgactatacattttactcttccaccaaaaaacctgagtagcatttccattgaaaaattgagatttctta 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10879007 atcccatagttcatcatcaatactcatgatgtgactatacattttactcttccaccaaaaaacctgagtagcatttccattgaaaaattgagatttctta 10878908  T
Q  312 gagtagctgtcattttcaactttggaagtgttgtaatcatagtagacagttgcatggtggtttctccctgaactgctaggaacattttctaaggacatat 411  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10878907 gagtagctgtcattttcaactttggaagtgttgtaatcatagtagacagttgcatggtggtttctccctgaagtgctaggaacattttctaaggacatat 10878808  T
Q  412 ttttctcactagatcttcttatatggcacggttaagtggcagcacacagaccgtgctctaataccaactgaaggtgagaaaaatacaataagaagggttg 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10878807 ttttctcactagatcttcttatatggcacggttaagtggcagcacacagaccgtgctctgataccaactgaaggtgagaaaaatacaataagaagggttg 10878708  T
Q  512 aat 514  Q
    |||    
T  10878707 aat 10878705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 15960561 - 15960505
Alignment:
Q  197 accatcttcaataatatcccatagttcatcatcaatactcatgatgtgactatacat 253  Q
    ||||||||||| ||||||||||||||||||||| | || ||||||||||||||||||    
T  15960561 accatcttcaagaatatcccatagttcatcatctaaacccatgatgtgactatacat 15960505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0496 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 10856 - 11048
Alignment:
Q  12 gagcacagagattcaaagatggttttggcagaggatttgttgacaatcttcacatattttgagtaaggtatagcttctacaagacttccacgcaccctat 111  Q
    ||||||||||||||||| ||||| ||| |||  ||  | ||||||||||||| ||||| ||| | ||||| | | |||| |||| ||| | |||||||||    
T  10856 gagcacagagattcaaatatggtcttgacagtagacctattgacaatcttcaaatattctgaatgaggtagaacatctataagaattctatgcaccctat 10955  T
Q  112 gatgctttctgtagatcttcttctcagcctcagtaagactatttctgtcacgtgccattccttctttatcaacagcaatctcaataccatctt 204  Q
    ||||||||| ||||| |||||  | ||||||||| |||||||||||||||| || |||| |||||| ||||||  ||| ||||||| ||||||    
T  10956 gatgctttccgtagaacttctaatgagcctcagttagactatttctgtcacttgtcatttcttcttcatcaacttcaaactcaatatcatctt 11048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 327 - 428
Target Start/End: Complemental strand, 25917444 - 25917343
Alignment:
Q  327 tcaactttggaagtgttgtaatcatagtagacagttgcatggtggtttctccctgaactgctaggaacattttctaaggacatatttttctcactagatc 426  Q
    |||||||||| ||||||||||||||||||||| | ||||||||||||||| |||||| |||||||  |||| ||  | ||||| |||| |||||||||||    
T  25917444 tcaactttgggagtgttgtaatcatagtagacggctgcatggtggtttcttcctgaagtgctaggttcattgtcataagacatgttttcctcactagatc 25917345  T
Q  427 tt 428  Q
    ||    
T  25917344 tt 25917343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0412 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 198 - 297
Target Start/End: Complemental strand, 656 - 557
Alignment:
Q  198 ccatcttcaataatatcccatagttcatcatcaatactcatgatgtgactatacattttactcttccaccaaaaaacctgagtagcatttccattgaaaa 297  Q
    ||||||| ||||| |||||| |||||||||||||| |  ||||||| |||||| |||||||||||||||||| | | |||||||| || |||||||||||    
T  656 ccatctttaataacatcccagagttcatcatcaatccctatgatgtaactatagattttactcttccaccaagagaactgagtagaatctccattgaaaa 557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 169 - 269
Target Start/End: Original strand, 13262726 - 13262826
Alignment:
Q  169 ttccttctttatcaacagcaatctcaataccatcttcaataatatcccatagttcatcatcaatactcatgatgtgactatacattttactcttccacca 268  Q
    ||||||||| ||| | || ||| |||| ||||||||| | ||||||||| |||||||||||||||| |||||| ||||| ||||| ||||| ||||||||    
T  13262726 ttccttcttcatctagaggaatgtcaaaaccatcttctaaaatatcccaaagttcatcatcaatacccatgatatgactgtacatcttacttttccacca 13262825  T
Q  269 a 269  Q
    |    
T  13262826 a 13262826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 269
Target Start/End: Original strand, 9064520 - 9064594
Alignment:
Q  195 ataccatcttcaataatatcccatagttcatcatcaatactcatgatgtgactatacattttactcttccaccaa 269  Q
    |||||||||||||| || | ||| |||||||| |||| ||  ||||| ||||||||||| ||||| |||||||||    
T  9064520 ataccatcttcaatgatgttccaaagttcatcttcaacaccaatgatatgactatacatcttacttttccaccaa 9064594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 198 - 299
Target Start/End: Complemental strand, 92368 - 92267
Alignment:
Q  198 ccatcttcaataatatcccatagttcatcatcaatactcatgatgtgactatacattttactcttccaccaaaaaacctgagtagcatttccattgaaaa 297  Q
    ||||||| ||||| |||||| ||||||||||||||    ||||||| |||||||||||| ||||| |||||| | | ||||| ||||| |||||||||||    
T  92368 ccatctttaataacatcccagagttcatcatcaatctatatgatgtaactatacattttgctcttgcaccaagataactgaggagcatctccattgaaaa 92269  T
Q  298 at 299  Q
    ||    
T  92268 at 92267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 438 - 499
Target Start/End: Original strand, 20310890 - 20310951
Alignment:
Q  438 cacggttaagtggcagcacacagaccgtgctctaataccaactgaaggtgagaaaaatacaa 499  Q
    |||||||||||||||  | |||||  |||||||||||||||| |||||||||||||||||||    
T  20310890 cacggttaagtggcaaaatacagattgtgctctaataccaaccgaaggtgagaaaaatacaa 20310951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 438 - 499
Target Start/End: Original strand, 21097523 - 21097584
Alignment:
Q  438 cacggttaagtggcagcacacagaccgtgctctaataccaactgaaggtgagaaaaatacaa 499  Q
    |||||||||||||||  | |||||  |||||||||||||||| |||||||||||||||||||    
T  21097523 cacggttaagtggcaaaatacagattgtgctctaataccaaccgaaggtgagaaaaatacaa 21097584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 253
Target Start/End: Complemental strand, 17446865 - 17446809
Alignment:
Q  197 accatcttcaataatatcccatagttcatcatcaatactcatgatgtgactatacat 253  Q
    ||||||||||| ||||||||| ||||||||||| | || ||||||||||||||||||    
T  17446865 accatcttcaagaatatcccaaagttcatcatctaaacccatgatgtgactatacat 17446809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 464 - 504
Target Start/End: Original strand, 11129932 - 11129972
Alignment:
Q  464 gtgctctaataccaactgaaggtgagaaaaatacaataaga 504  Q
    ||||| |||||||||| ||||||||||||||||||| ||||    
T  11129932 gtgctttaataccaacagaaggtgagaaaaatacaagaaga 11129972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 411 - 508
Target Start/End: Complemental strand, 2776 - 2679
Alignment:
Q  411 tttttctcactagatcttcttatatggcacggttaagtggcagcacacagaccgtgctctaataccaactgaaggtgagaaaaatacaataagaaggg 508  Q
    ||||||||||| ||||||  | | ||| || ||||||||||||  || | ||||| |||| ||||||||||||||||||||||| |||  ||||||||    
T  2776 tttttctcactggatctttatctgtggtacagttaagtggcagagcatataccgtactctgataccaactgaaggtgagaaaaacacatgaagaaggg 2679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 256
Target Start/End: Complemental strand, 17527556 - 17527492
Alignment:
Q  192 tcaataccatcttcaataatatcccatagttcatcatcaatactcatgatgtgactatacatttt 256  Q
    |||| ||||||||||| |||||||||| |||| ||||| || | |||||| ||||||||||||||    
T  17527556 tcaacaccatcttcaagaatatcccattgttcttcatctatgcccatgatatgactatacatttt 17527492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 494
Target Start/End: Complemental strand, 21810819 - 21810781
Alignment:
Q  456 cacagaccgtgctctaataccaactgaaggtgagaaaaa 494  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  21810819 cacaaaccgtgctcaaataccaactgaaggtgagaaaaa 21810781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 269
Target Start/End: Complemental strand, 24155194 - 24155117
Alignment:
Q  192 tcaataccatcttcaataatatcccatagttcatcatcaatactcatgatgtgactatacattttactcttccaccaa 269  Q
    ||||||||||||||||| |||| ||  ||||| | |||||||   ||||||||||||||||| || || |||||||||    
T  24155194 tcaataccatcttcaatgatattccgaagttcttaatcaatatcaatgatgtgactatacatcttgcttttccaccaa 24155117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 514
Target Start/End: Original strand, 27857974 - 27858015
Alignment:
Q  473 taccaactgaaggtgagaaaaatacaataagaagggttgaat 514  Q
    |||||||||||||||||||||| |||| ||| ||||||||||    
T  27857974 taccaactgaaggtgagaaaaacacaagaaggagggttgaat 27858015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 466 - 514
Target Start/End: Original strand, 9345960 - 9346008
Alignment:
Q  466 gctctaataccaactgaaggtgagaaaaatacaataagaagggttgaat 514  Q
    ||||| |||| |||||||||||||||||| |||| ||| ||||||||||    
T  9345960 gctctgatacaaactgaaggtgagaaaaacacaagaaggagggttgaat 9346008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 20966944 - 20967016
Alignment:
Q  197 accatcttcaataatatcccatagttcatcatcaatactcatgatgtgactatacattttactcttccaccaa 269  Q
    |||||||||||  | |||||||||||| ||||| | |||||| ||||||||||| |||||  | |||||||||    
T  20966944 accatcttcaagcacatcccatagttcttcatctaaactcataatgtgactataaattttggttttccaccaa 20967016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 31217699 - 31217770
Alignment:
Q  197 accatcttcaataatatcccatagttcatcatcaa-tactcatgatgtgactatacattttactcttccacca 268  Q
    |||||||||||| ||||||||||| |||||||||| | || || ||||| ||||||||||| ||||| |||||    
T  31217699 accatcttcaatgatatcccatagctcatcatcaacttct-ataatgtggctatacattttgctcttacacca 31217770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University