View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18290_low_6 (Length: 481)
Name: NF18290_low_6
Description: NF18290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18290_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Original strand, 31111883 - 31112345
Alignment:
| Q |
11 |
cataggtaagcaggtaccttataaatgttctagtcaagagcaaaattgttgtgaaacatgcttgcttcctaaggcagttcttcatggtttttcatatctt |
110 |
Q |
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| T |
31111883 |
cataggtaagcaggtaccttataaatgttctagtcaagagcaaaattgttgtgaaacatgcttgcttcctaaggcagttcttcatggtttttcatatctt |
31111982 |
T |
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| Q |
111 |
agtaggcatctatacataatacatattgcattttctctgaggatttaatttatatacatcgtcagtgtaaagaatttttacattgtttaccaatcataat |
210 |
Q |
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| T |
31111983 |
agtaggcatctatacataatacatattgcattttctctgaggatttaatttatatacatcgtcagtgtaaagaatttttacattgtttaccaatcataat |
31112082 |
T |
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| Q |
211 |
cgtgagatcataaaaacaattttttgaatttaattataaagtctcatataatttgttgtgatatactgacagtgtcaaactagttttgcacggacagcat |
310 |
Q |
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| T |
31112083 |
cgtgagatcataaaaacaattttttgaatttaattataaagtctcatataatttgttgtgatatactgacagtgtcaaactagttttgcacggacagcat |
31112182 |
T |
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| Q |
311 |
caaaatcaaactcagtctatcaaatggataatgaagtttgaactaatcaatttgagatgtgttccttccttctttacagatgacattgacctagatgatc |
410 |
Q |
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| T |
31112183 |
caaaatcaaactcagtctatcaaatggataatgaagtttgaactaatcaatttgagatgtgttccttccttctttacagatgacattgacctagatgatc |
31112282 |
T |
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| Q |
411 |
atgtagaaaagcgcaaagatcacgggatattgggaattggagctcttaataagaagaaattga |
473 |
Q |
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| T |
31112283 |
atgtagaaaagcgcaaagatcacgggatattgggaattggagctcttaataagaagaaattga |
31112345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 9864215 - 9864167
Alignment:
| Q |
148 |
tgaggatttaatttatatacatcgtcagtgtaaagaatttttacattgt |
196 |
Q |
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| T |
9864215 |
tgaggatttaattcatatagaccgtcagtgtaaagaatttttactttgt |
9864167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 153 - 187
Target Start/End: Complemental strand, 6761682 - 6761648
Alignment:
| Q |
153 |
atttaatttatatacatcgtcagtgtaaagaattt |
187 |
Q |
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| T |
6761682 |
atttaatttatatacattgtcagtgtaaagaattt |
6761648 |
T |
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