View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18290_low_7 (Length: 479)
Name: NF18290_low_7
Description: NF18290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18290_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 91 - 408
Target Start/End: Complemental strand, 36468679 - 36468362
Alignment:
| Q |
91 |
aagaatttaatttgtgcacaagttgtttttaacaattgaagattgaacgaaagcaaaacaagtttatgaaaataagttaaatgagttagagttaaaatca |
190 |
Q |
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| T |
36468679 |
aagaatttaatttgtgcacaagttgtttttaacaattgaagattgaacgaaagcaaaacaagtttatgaaaataagttaaatgagttagagttaaaatca |
36468580 |
T |
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| Q |
191 |
ggttacaaacaaaatatttctaattcatttatatcgtgaaagagttgcacaagttgtttatattaaaaccattgaagataaataagggtttttggttttt |
290 |
Q |
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| T |
36468579 |
ggttacaaacaaaatatttctaattcatttatatcgtgaaagagttgcagaagttgtttatattaataccattgaagataaataagggtttttggttttt |
36468480 |
T |
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| Q |
291 |
cgtgtgtatattaggggagttagaatgttagaacttggaaatggaggggtggaattctaagaggagaagaagaggagcgtgatgatagcggtggtgtgtt |
390 |
Q |
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| T |
36468479 |
cgtgtgtatattaggggagttagaatgttagaacatggaaatggaggggtggaattctaagaggagaagaagaggagcgtaatgatagcggtggtgtgtt |
36468380 |
T |
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| Q |
391 |
actggaggccaggtggag |
408 |
Q |
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| T |
36468379 |
actggaggccaggtggag |
36468362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 36469991 - 36469936
Alignment:
| Q |
18 |
tgtaaatgacgctcttatttaaaaagttggatgagcgagaaaggtatatttccttt |
73 |
Q |
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| T |
36469991 |
tgtaaatgacgctcttatttaaaaagttggctgagcgagaaagatatatttccttt |
36469936 |
T |
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