View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_high_10 (Length: 524)
Name: NF18291_high_10
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 11 - 508
Target Start/End: Original strand, 50505055 - 50505552
Alignment:
| Q |
11 |
cacagacatatcacgtgacacaagaagaaataaaagaaagaacaagacacagaaacatcatcaacaagatcaaattcaaatcaaccctaaatggaaatcc |
110 |
Q |
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| T |
50505055 |
cacagacatatcacgtgacacaagaagaaagaaaagaaagaacaagacacagaaacatcatcaacaagatcaaattcaaatcaaccctaaatggaaatcc |
50505154 |
T |
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| Q |
111 |
caagaacaacaacaaatctactccaccaagctccgtcaagccataacaagagtcaactcatcatccaccccgcgccgaggaaaagccgttcgagaagccg |
210 |
Q |
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| T |
50505155 |
caagaacaacaacaaatctactccaccaagctccgtcaagccataacaagagtcaactcatcatccaccccgcgccgaggaaaagccgttcgagaagccg |
50505254 |
T |
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| Q |
211 |
ctgatagagctctggcggtgacggccagaggaagaactcgttggagccggaccattctaatgacccggctcaagatcaagtttaggaagaaaaaacctaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50505255 |
ctgatagagctctggcggtgacggccagaggaagaactcgttggagccggaccattctaatgacccggctcaagatcaagtttaggaagaaaaaacctaa |
50505354 |
T |
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| Q |
311 |
cagggtaacggcgctgccgtcaactaggtcaaagaagtcaagggtcaatgttttccggttgaagggaaaggtggtaccaagtatgcaaaggaaagtaagg |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
50505355 |
cagggtaacggcgctgccgtcaactaggtcaaagaagtcaagggtcaatgttttccggttgaagggaaaggtagtaccaagtatgcaaaggaaagtaagg |
50505454 |
T |
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| Q |
411 |
tttcttggagggttggttcctggttgcaaaaaggaaccattaccggtgattcttgaagaagctattgattatatacctgcacttgagatgcaggttag |
508 |
Q |
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| T |
50505455 |
tttcttggagggttggttcctggttgcaaaaaggaaccattaccggtgattcttgaagaagctattgattatatacctgcacttgagatgcaggttag |
50505552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 421 - 502
Target Start/End: Complemental strand, 12913730 - 12913649
Alignment:
| Q |
421 |
ggttggttcctggttgcaaaaaggaaccattaccggtgattcttgaagaagctattgattatatacctgcacttgagatgca |
502 |
Q |
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| T |
12913730 |
ggttagttcctggttgtagaaaagaaccgttaccggttattcttgaagaagttattgattatataccagctcttgagatgca |
12913649 |
T |
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