View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_high_18 (Length: 465)
Name: NF18291_high_18
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 117 - 449
Target Start/End: Complemental strand, 8799641 - 8799309
Alignment:
| Q |
117 |
tgacagagatatacaagttgattgttatttttacaattattgatgatgaaagtgatatttcaattctcagaatcaatacaaaagggagtgaaacgcacac |
216 |
Q |
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| T |
8799641 |
tgacagagatatacaagttgattgttatttttacaattatagatgatgaaagtgatatttcaattctcagaatcaatacaaaagggagtgaaacgcacac |
8799542 |
T |
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| Q |
217 |
gcatctagttggtttaattaggaagcagttgcaagaaaataacatgcatatcgaatcaaaattgtactcctcctttattttaataaagtcatgtttataa |
316 |
Q |
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| T |
8799541 |
gcatctagttggtttcattaggaagcagttgcaagaaaataacatgcatatcgaatcaaaattgtactcctcctttattttaataaaatcatgtttataa |
8799442 |
T |
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| Q |
317 |
ttacaattggagagcaaattgatatattttatgaatttcctaaaatgccttaatttgtcacttcagatagaggacaacatatgaatggtgtgagacttgt |
416 |
Q |
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| T |
8799441 |
ttacaattggagagcaaattgatatattttatgaatttcctaaaatgccttaatttgtcacttcagatagaggacagcatatgaatggtgtgagacttgt |
8799342 |
T |
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| Q |
417 |
gagctgatgtaattatgctacctgcctaactct |
449 |
Q |
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| T |
8799341 |
gagctgatgtaattatgctacctgcctaactct |
8799309 |
T |
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