View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_high_23 (Length: 384)
Name: NF18291_high_23
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 341
Target Start/End: Complemental strand, 22714053 - 22713710
Alignment:
| Q |
11 |
cagagaaatggtttgtggtggtcgtagtgttggtcgttgatggtcatcgatcgttggtggtaacatgttaacgttaaaataaatacaagaattataaacc |
110 |
Q |
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| T |
22714053 |
cagagaaatggtttttggtggtcgtagtgttggtcgttgatggtcatcgatcgttggtggtaacatgttaacgttaaaataaatacaagaattataaacc |
22713954 |
T |
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| Q |
111 |
tattt--gtcgttttaagatttaagtgaaacctattttcaaattaagtnnnnnnnccaattcaaattcattttatcgaagcatgttttgttttcaaattt |
208 |
Q |
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| T |
22713953 |
tatttttgtggttttaagatttaagtgaaacctattttcaaattaagtaaaaaaaccaattcaaattcattttatccaaacatgttttgttttcaaattt |
22713854 |
T |
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| Q |
209 |
accctttaaaatcaataacttataaccatcatgaacggctccttaattttgtccaagttattttttcaagt-----------acattgattcttgcttgg |
297 |
Q |
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| T |
22713853 |
aacctttaaaatcaataacttataaccatcatgaacggctccttaattttgtccaagttattttttcaagtgcttgtttttctcattgattcttgcttgg |
22713754 |
T |
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| Q |
298 |
aatggtttaagcatgtaaaaaagaatgtaactatgtcattaatt |
341 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22713753 |
aatggtttaagcatgtaaaaaagaatgtaactatgtccttaatt |
22713710 |
T |
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