View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_high_26 (Length: 361)
Name: NF18291_high_26
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_high_26 |
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Alignment Details
Target: chr3 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 7 - 348
Target Start/End: Complemental strand, 48387254 - 48386913
Alignment:
| Q |
7 |
gaataaaagataaggagaagctgggattcacttttgaacatataatgcaaccagttacataaacatattacattaaatcaaaaggacataaagttcaaaa |
106 |
Q |
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| T |
48387254 |
gaataaaagataaggagaagctgagattcacttttgaacatacaatgcaaccagtaacataaacatattacattaaatcaaaaggacataaagttcaaaa |
48387155 |
T |
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| Q |
107 |
gcttttcaagacatacataattaagctctcttaaccggatcaaagttggaaaccccaataacagctccaagtatagctgttagcacagctccaccagcaa |
206 |
Q |
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| T |
48387154 |
gcttttcaagacatacataattaagctctcttaaccggatcaaagttggaaaccccaataacagctccaagtatagctgttagcacagctccaccagcaa |
48387055 |
T |
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| Q |
207 |
aaatgcttagcaaaaagttctggagagatggtgagagatcagatccagctgcatgagccacatcaggtataaccatggaggctgtcaaggatgcagctgt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48387054 |
aaatgcttagcaaaaagttctggagagatggtgagagatcagatccagctgcatgagccacatcaggtataaccatggaggctgtcaaggatgcagctgt |
48386955 |
T |
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| Q |
307 |
aattgctgtcactgccttttctttcaaagatgcattaatttc |
348 |
Q |
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| T |
48386954 |
aattgctgtcactgccttttctttcaaagatgcattaatttc |
48386913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 124 - 291
Target Start/End: Complemental strand, 3764878 - 3764711
Alignment:
| Q |
124 |
taattaagctctcttaaccggatcaaagttggaaaccccaataacagctccaagtatagctgttagcacagctccaccagcaaaaatgcttagcaaaaag |
223 |
Q |
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|||||||| ||||||||| ||||||||||||||||| |||| |||||| || | ||||||||| || ||| | ||||||||| |||||| ||||||||| |
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| T |
3764878 |
taattaagttctcttaacaggatcaaagttggaaacaccaacaacagcacccaatatagctgtaagaacaacaccaccagcagcaatgctaagcaaaaag |
3764779 |
T |
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| Q |
224 |
ttctggagagatggtgagagatcagatccagctgcatgagccacatcaggtataaccatggaggctgt |
291 |
Q |
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|| | ||||||||||| | |||| ||||||||||||||| ||||| |||| ||||| |||||||| |
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| T |
3764778 |
tttttaagagatggtgaaaaatcatttccagctgcatgagcaacatctggtaacaccatagaggctgt |
3764711 |
T |
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