View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18291_high_29 (Length: 320)

Name: NF18291_high_29
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18291_high_29
NF18291_high_29
[»] chr3 (5 HSPs)
chr3 (1-223)||(38156405-38156628)
chr3 (136-204)||(48811405-48811474)
chr3 (134-204)||(46110888-46110959)
chr3 (111-203)||(28874493-28874587)
chr3 (68-204)||(45529087-45529225)
[»] chr5 (5 HSPs)
chr5 (111-208)||(12198192-12198290)
chr5 (126-198)||(2689277-2689349)
chr5 (148-198)||(24232489-24232539)
chr5 (137-192)||(2827602-2827658)
chr5 (125-204)||(30370883-30370962)
[»] chr7 (5 HSPs)
chr7 (111-209)||(47639179-47639279)
chr7 (136-204)||(46726136-46726205)
chr7 (127-204)||(36939471-36939549)
chr7 (136-204)||(2959611-2959680)
chr7 (134-177)||(4133825-4133868)
[»] chr4 (11 HSPs)
chr4 (126-178)||(12618721-12618773)
chr4 (111-204)||(53391245-53391340)
chr4 (126-203)||(5799013-5799091)
chr4 (126-193)||(11260568-11260636)
chr4 (126-172)||(14949014-14949060)
chr4 (120-204)||(31072490-31072576)
chr4 (148-204)||(36112535-36112591)
chr4 (136-172)||(48315957-48315993)
chr4 (151-204)||(13800748-13800802)
chr4 (151-204)||(54552798-54552852)
chr4 (111-205)||(41415762-41415858)
[»] chr2 (11 HSPs)
chr2 (126-212)||(20128321-20128409)
chr2 (126-205)||(39309755-39309835)
chr2 (68-199)||(24791994-24792128)
chr2 (125-192)||(35022619-35022687)
chr2 (126-204)||(24762741-24762820)
chr2 (126-204)||(24765335-24765414)
chr2 (126-172)||(2713454-2713500)
chr2 (111-172)||(34233933-34233995)
chr2 (140-209)||(37978489-37978559)
chr2 (136-193)||(39445468-39445526)
chr2 (136-204)||(814996-815065)
[»] chr8 (4 HSPs)
chr8 (126-204)||(24733172-24733251)
chr8 (151-204)||(8674459-8674513)
chr8 (120-204)||(44253807-44253892)
chr8 (148-201)||(15353819-15353873)
[»] chr1 (6 HSPs)
chr1 (126-204)||(46803515-46803594)
chr1 (136-205)||(27004060-27004130)
chr1 (114-204)||(43024927-43025019)
chr1 (151-204)||(45775857-45775911)
chr1 (151-203)||(16790297-16790350)
chr1 (132-204)||(27542860-27542933)
[»] scaffold0003 (1 HSPs)
scaffold0003 (68-204)||(353942-354080)
[»] chr6 (2 HSPs)
chr6 (63-164)||(4806466-4806568)
chr6 (151-203)||(7341412-7341465)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 5e-90; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 38156405 - 38156628
Alignment:
Q  1 acctttcttgttacttaagtttcagtaatgcttcataacattttaagcccaacaatattttataggaaaatgttaacgagtacccccatgatactattta 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||  || ||    
T  38156405 acctttcttgttacttaagtttcagtaaagcttcataacattttaaacccaacgatattttataggaaaatgttaacgagtacccccatgatatgatata 38156504  T
Q  101 agaagattttatagtaaactttta-taaaatatgtataatcaatgcaatgaaatttgtaacatttgactttttaaaaaatactttttaaatttaggatcc 199  Q
    ||||||||| |||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  38156505 agaagatttaatagtaaacttttattaaaatatgtgtaatcaatgcattgaaatttgtaacatttgactttttaaaaaatactttctaaatttaagatcc 38156604  T
Q  200 ttaaaagtgtcccagttaactaaa 223  Q
    ||||||||||||| ||||||||||    
T  38156605 ttaaaagtgtcccggttaactaaa 38156628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 48811405 - 48811474
Alignment:
Q  136 taatcaatgcaatgaaatttgtaacatttgac-tttttaaaaaatactttttaaatttaggatccttaaa 204  Q
    ||||||||||| |||||||||||||||| ||| |||||||  |||| ||| |||||||||||||||||||    
T  48811405 taatcaatgcattgaaatttgtaacattagacttttttaatgaatattttctaaatttaggatccttaaa 48811474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 46110888 - 46110959
Alignment:
Q  134 tataatcaatgcaatgaaatttgtaacatttga-ctttttaaaaaatactttttaaatttaggatccttaaa 204  Q
    |||||| |||| | ||||||||||||||||| | |||||| |  |||| |||||||||||||||||||||||    
T  46110888 tataataaatgtattgaaatttgtaacatttaatctttttgaggaatattttttaaatttaggatccttaaa 46110959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 28874587 - 28874493
Alignment:
Q  111 atagtaaacttttataaaata-tgtataatcaatgcaatgaaatttgtaacatttgac-tttttaaaaaatactttttaaatttaggatccttaa 203  Q
    |||||||| |||||| ||| | ||| ||||||||||| || |||||||||||||| || |||||||| |||  ||| ||||||||| ||||||||    
T  28874587 atagtaaatttttatgaaaaactgtgtaatcaatgcattggaatttgtaacattttacttttttaaagaatgttttctaaatttagtatccttaa 28874493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 204
Target Start/End: Original strand, 45529087 - 45529225
Alignment:
Q  68 aaatgttaacgagtacccccatgatactatttaagaagattttatagtaaacttttat-aaaatatgtataatcaatgcaatgaaatttgtaacatttga 166  Q
    |||||||||||||| |||||  |||||| |||||| |   || |||||||  |||||| ||||| | | ||||||||||| ||||| ||||||| |||||    
T  45529087 aaatgttaacgagtgcccccgggatactctttaagcacccttaatagtaagtttttatgaaaatttatgtaatcaatgcactgaaacttgtaacgtttga 45529186  T
Q  167 c-tttttaaaaaatactttttaaatttaggatccttaaa 204  Q
    | ||||| || |||| ||| ||||||| |||| ||||||    
T  45529187 cttttttgaagaatattttctaaatttgggatgcttaaa 45529225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 12198290 - 12198192
Alignment:
Q  111 atagtaaacttttat-aaaatatgtataatcaatgcaatgaaatttgtaacatttgactttttaaaaaatactttttaaatttaggatccttaaaagtg 208  Q
    |||||||| |||||| |||||||||  ||| || ||| |||||||||||| ||||||||||||||| |||| ||||||||||| | |||||||||||||    
T  12198290 atagtaaatttttatgaaaatatgtgcaattaaagcattgaaatttgtaatatttgactttttaaacaatattttttaaatttggaatccttaaaagtg 12198192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 2689277 - 2689349
Alignment:
Q  126 aaaatatgtataatcaatgcaatgaaatttgtaacatttgactttttaaaaaatactttttaaatttaggatc 198  Q
    |||||||||||||||||  || |  ||||| |||||||||| ||||||||||||| |||||||||||| ||||    
T  2689277 aaaatatgtataatcaaaacatttgaatttataacatttgattttttaaaaaatattttttaaatttaagatc 2689349  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 198
Target Start/End: Original strand, 24232489 - 24232539
Alignment:
Q  148 tgaaatttgtaacatttgactttttaaaaaatactttttaaatttaggatc 198  Q
    |||||||||||| |||| | |||||||| |||| |||||||||||||||||    
T  24232489 tgaaatttgtaatatttaattttttaaataatattttttaaatttaggatc 24232539  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 2827602 - 2827658
Alignment:
Q  137 aatcaatgcaatgaaatttgtaacatttgacttt-ttaaaaaatactttttaaattt 192  Q
    |||||||||| ||||| ||||||||||||||||| ||||| |||| ||| |||||||    
T  2827602 aatcaatgcattgaaacttgtaacatttgactttcttaaataatattttctaaattt 2827658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 30370883 - 30370962
Alignment:
Q  125 taaaatatgtataatcaatgcaatgaaatttgtaacatttgactttt-taaaaaatactttttaaatttaggatccttaaa 204  Q
    |||||| ||| |||||||  || |||||||| ||| ||||||||||| |||||||||||||||||||| |  |||||||||    
T  30370883 taaaatctgtgtaatcaagacattgaaatttataa-atttgacttttataaaaaatactttttaaattaaaaatccttaaa 30370962  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 209
Target Start/End: Complemental strand, 47639279 - 47639179
Alignment:
Q  111 atagtaaacttttataaaatat-gtataatcaatgcaatgaaatttgtaacatttgactttttaaaa-aatactttttaaatttaggatccttaaaagtg 208  Q
    ||||||||||||||||||| || || |||||||| || | ||||||||||||||| | ||||| ||| |||| ||||||||||||||||||||||| |||    
T  47639279 atagtaaacttttataaaaaattgtgtaatcaatacattaaaatttgtaacatttaatttttttaaagaatattttttaaatttaggatccttaaatgtg 47639180  T
Q  209 t 209  Q
    |    
T  47639179 t 47639179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 46726205 - 46726136
Alignment:
Q  136 taatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaatttaggatccttaaa 204  Q
    ||||||||||| ||||||||||||||||||||| ||||||| |||| ||||||||||| | |||||||||    
T  46726205 taatcaatgcattgaaatttgtaacatttgacttttttaaagaatattttttaaatttggtatccttaaa 46726136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 36939549 - 36939471
Alignment:
Q  127 aaatatgtataatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaatttaggatccttaaa 204  Q
    |||| ||| |||| |||||| ||||||||||||||||||||| |||| |  |||| |||||||||||| ||||||||||    
T  36939549 aaatttgtgtaattaatgcactgaaatttgtaacatttgacttttttgaggaatattttttaaatttaagatccttaaa 36939471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 2959611 - 2959680
Alignment:
Q  136 taatcaatgcaatgaaatttgtaacatttgacttttt-aaaaaatactttttaaatttaggatccttaaa 204  Q
    ||||||||||| | |||||| |||||||| ||||||| |||||||| ||||| |||||| ||||||||||    
T  2959611 taatcaatgcattaaaatttataacatttaactttttcaaaaaatatttttttaatttatgatccttaaa 2959680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 134 - 177
Target Start/End: Original strand, 4133825 - 4133868
Alignment:
Q  134 tataatcaatgcaatgaaatttgtaacatttgactttttaaaaa 177  Q
    ||||||||||||| ||||||||||||||||||| ||||| ||||    
T  4133825 tataatcaatgcattgaaatttgtaacatttgatttttttaaaa 4133868  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 178
Target Start/End: Original strand, 12618721 - 12618773
Alignment:
Q  126 aaaatatgtataatcaatgcaatgaaatttgtaacatttgactttttaaaaaa 178  Q
    ||||| ||||||||||||||| |||||||| ||||||||||||||||||||||    
T  12618721 aaaatttgtataatcaatgcattgaaatttataacatttgactttttaaaaaa 12618773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 204
Target Start/End: Original strand, 53391245 - 53391340
Alignment:
Q  111 atagtaaacttttataaaa-tatgtataatcaatgcaatgaaatttgtaacatttgactt-tttaaaaaatactttttaaatttaggatccttaaa 204  Q
    |||||||||| |||||||| |||||  |||||||||| |||||||||||||||||||||| ||| || |||| ||| ||||||||| || ||||||    
T  53391245 atagtaaactcttataaaaatatgtgcaatcaatgcattgaaatttgtaacatttgacttcttttaagaatattttctaaatttagtattcttaaa 53391340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 126 - 203
Target Start/End: Original strand, 5799013 - 5799091
Alignment:
Q  126 aaaatatgtataatcaatgcaatgaaatttgtaacatttgactttttaaaa-aatactttttaaatttaggatccttaa 203  Q
    ||||| ||||||||||| ||| | |||||||||| |||||||||||||||| |||| ||| |||||||| |||||||||    
T  5799013 aaaatttgtataatcaacgcatttaaatttgtaatatttgactttttaaaagaatattttctaaatttaagatccttaa 5799091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 193
Target Start/End: Complemental strand, 11260636 - 11260568
Alignment:
Q  126 aaaatatgtataatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaattta 193  Q
    ||||||| | |||||| |||| ||||||||||||||||||||| ||||||| |||| ||||||||||||    
T  11260636 aaaatatatgtaatcattgcattgaaatttgtaacatttgacttttttaaagaatattttttaaattta 11260568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 14949014 - 14949060
Alignment:
Q  126 aaaatatgtataatcaatgcaatgaaatttgtaacatttgacttttt 172  Q
    ||||| ||| ||||||||||| |||||||||||||||||||||||||    
T  14949014 aaaatttgtgtaatcaatgcattgaaatttgtaacatttgacttttt 14949060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 31072490 - 31072576
Alignment:
Q  120 ttttataaaata-tgtataatcaatgcaatgaaatttgtaacatttgacttttt-aaaaaatactttttaaatttaggatccttaaa 204  Q
    |||||||||| | ||| |||||||||||  | |||||||||||||||||||||| ||| |||| ||| |||||||| ||||||||||    
T  31072490 ttttataaaaaactgtgtaatcaatgcataggaatttgtaacatttgactttttcaaagaatattttctaaatttatgatccttaaa 31072576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 36112591 - 36112535
Alignment:
Q  148 tgaaatttgtaacatttgactttttaaaaaatactttttaaatttaggatccttaaa 204  Q
    ||||||||||||||||| | |||||||| |||| ||||| ||||| |||||||||||    
T  36112591 tgaaatttgtaacatttaattttttaaagaatatttttttaatttgggatccttaaa 36112535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 172
Target Start/End: Complemental strand, 48315993 - 48315957
Alignment:
Q  136 taatcaatgcaatgaaatttgtaacatttgacttttt 172  Q
    ||||||||||| |||||||||||||||||||||||||    
T  48315993 taatcaatgcattgaaatttgtaacatttgacttttt 48315957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 13800748 - 13800802
Alignment:
Q  151 aatttgtaacatttgactttttaaaa-aatactttttaaatttaggatccttaaa 204  Q
    ||||||||| |||||||||||| ||| |||| ||| |||||||||||||||||||    
T  13800748 aatttgtaatatttgacttttttaaagaatattttctaaatttaggatccttaaa 13800802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 54552798 - 54552852
Alignment:
Q  151 aatttgtaacatttgac-tttttaaaaaatactttttaaatttaggatccttaaa 204  Q
    ||||||||||||||||| |||||||| |||| ||| |||||||||||| ||||||    
T  54552798 aatttgtaacatttgacctttttaaagaatattttctaaatttaggattcttaaa 54552852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 205
Target Start/End: Original strand, 41415762 - 41415858
Alignment:
Q  111 atagtaaacttttataaaatat-gtataatcaatgcaatgaaatttgtaacatttgac-tttttaaaaaatactttttaaatttaggatccttaaaa 205  Q
    |||||||| |||||||||| || || ||||||||||| || |||||||||| | |||| |||||||| |||| ||| || |||| | ||||||||||    
T  41415762 atagtaaatttttataaaaaattgtttaatcaatgcattgtaatttgtaacttgtgacttttttaaagaatattttctatatttggaatccttaaaa 41415858  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 212
Target Start/End: Complemental strand, 20128409 - 20128321
Alignment:
Q  126 aaaatatgtataatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaatttaggatccttaaa-agtgtccc 212  Q
    |||||| || ||||||||||| || |||||||||||||||||| ||||||| ||||  || ||||||||||||||||||| ||||||||    
T  20128409 aaaatacgtgtaatcaatgcattggaatttgtaacatttgacttttttaaagaataaattataaatttaggatccttaaagagtgtccc 20128321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 205
Target Start/End: Complemental strand, 39309835 - 39309755
Alignment:
Q  126 aaaatatgtataatcaatgcaatgaaatttgtaacatttgactt-tttaaaaaatactttttaaatttaggatccttaaaa 205  Q
    |||||||||||||||||| || ||||||||| || ||||||||| |||||| |||| ||| |||| |||| ||||||||||    
T  39309835 aaaatatgtataatcaattcattgaaatttgaaatatttgacttatttaaagaatattttctaaacttagaatccttaaaa 39309755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 199
Target Start/End: Complemental strand, 24792128 - 24791994
Alignment:
Q  68 aaatgttaacgagtacccccatgatactatttaagaagattttatagtaaacttttataaaa--tatgtataatcaatgcaatgaaatttgtaacatttg 165  Q
    |||||||||||||| |||| | |  ||| ||||||||   || |||||||  ||||||||||  ||| | ||||||||||| || |||||||||||||||    
T  24792128 aaatgttaacgagtgcccctagggcactctttaagaaccattaatagtaagtttttataaaaattatatgtaatcaatgcattggaatttgtaacatttg 24792029  T
Q  166 act-ttttaaaaaatactttttaaatttaggatcc 199  Q
    ||| ||||||| |||| ||| ||||||| ||||||    
T  24792028 acttttttaaagaatattttctaaatttgggatcc 24791994  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 192
Target Start/End: Complemental strand, 35022687 - 35022619
Alignment:
Q  125 taaaatatgtataatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaattt 192  Q
    |||||||||| ||||||||||| | |||||| ||| |||||||| |||||| ||||| |||||||||||    
T  35022687 taaaatatgtgtaatcaatgcattaaaatttataatatttgacttttttaagaaatattttttaaattt 35022619  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 204
Target Start/End: Original strand, 24762741 - 24762820
Alignment:
Q  126 aaaatatgtataatcaatgcaatgaaatttgtaacatttgac-tttttaaaaaatactttttaaatttaggatccttaaa 204  Q
    ||||||||||||||||||  | || ||||||||| ||||||| |||||||  |||| ||| ||||||| |||||||||||    
T  24762741 aaaatatgtataatcaatatattggaatttgtaatatttgacttttttaaggaatattttctaaatttgggatccttaaa 24762820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 24765414 - 24765335
Alignment:
Q  126 aaaatatgtataatcaatgcaatgaaatttgtaacatttga-ctttttaaaaaatactttttaaatttaggatccttaaa 204  Q
    ||||||||| ||||||||||| || ||||||||| ||||||  |||||||  |||| ||| ||||||| |||||||||||    
T  24765414 aaaatatgtgtaatcaatgcattggaatttgtaatatttgatttttttaaggaatattttctaaatttgggatccttaaa 24765335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 2713454 - 2713500
Alignment:
Q  126 aaaatatgtataatcaatgcaatgaaatttgtaacatttgacttttt 172  Q
    ||||| |||||||||| |||| || ||||||||||||||||||||||    
T  2713454 aaaatctgtataatcattgcattggaatttgtaacatttgacttttt 2713500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 172
Target Start/End: Original strand, 34233933 - 34233995
Alignment:
Q  111 atagtaaacttttata-aaatatgtataatcaatgcaatgaaatttgtaacatttgacttttt 172  Q
    |||||||| ||||||  |||| ||| ||||||||||| |||||||||||| ||||||||||||    
T  34233933 atagtaaatttttattcaaatttgtgtaatcaatgcattgaaatttgtaatatttgacttttt 34233995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 37978559 - 37978489
Alignment:
Q  140 caatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaatttaggatccttaaaagtgt 209  Q
    ||||||| | |||||||||| |||||||| ||||||| |||| ||| ||||||| ||||| ||||||||||    
T  37978559 caatgcattaaaatttgtaatatttgacttttttaaagaatattttctaaatttgggatctttaaaagtgt 37978489  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 39445468 - 39445526
Alignment:
Q  136 taatcaatgcaatgaaatttgtaacatttgactttt-taaaaaatactttttaaattta 193  Q
    |||||| |||| |||||||| |||||||| |||||| ||||||||| ||||||||||||    
T  39445468 taatcagtgcattgaaatttctaacatttaacttttttaaaaaatattttttaaattta 39445526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 815065 - 814996
Alignment:
Q  136 taatcaatgcaatgaaatttgtaacatttga-ctttttaaaaaatactttttaaatttaggatccttaaa 204  Q
    ||||||||||| || ||||||| ||||||||  ||||||||||||| ||| ||||||| |||| ||||||    
T  815065 taatcaatgcattggaatttgtgacatttgatttttttaaaaaataatttctaaatttgggatgcttaaa 814996  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 24733251 - 24733172
Alignment:
Q  126 aaaatatgtataatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaatttaggatccttaaa 204  Q
    ||||| ||| ||||||||||| || |||||||||||||||||| ||||| | |||| ||||||||||| |||||||||||    
T  24733251 aaaatttgtgtaatcaatgcactgtaatttgtaacatttgacttttttagagaatattttttaaatttgggatccttaaa 24733172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 8674513 - 8674459
Alignment:
Q  151 aatttgtaacatttgacttttt-aaaaaatactttttaaatttaggatccttaaa 204  Q
    |||||||||||||| ||||||| |||||||| ||||||||||| |||||||||||    
T  8674513 aatttgtaacatttaacttttttaaaaaatattttttaaatttgggatccttaaa 8674459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 44253892 - 44253807
Alignment:
Q  120 ttttataaaatatgtataatcaatgcaatgaaatttgtaacatttgact-ttttaaaaaatactttttaaatttaggatccttaaa 204  Q
    ||||||||||| ||| |||||||||   | |||||| |||||||||||| |||| ||||||| ||||||||||| | |||||||||    
T  44253892 ttttataaaatttgtgtaatcaatgatttaaaatttataacatttgactttttttaaaaatattttttaaatttggaatccttaaa 44253807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 15353819 - 15353873
Alignment:
Q  148 tgaaatttgtaacatttgactttt-taaaaaatactttttaaatttaggatcctt 201  Q
    |||||||||||| |||| |||||| ||||||||| ||| ||||||||||||||||    
T  15353819 tgaaatttgtaatatttcacttttttaaaaaatattttataaatttaggatcctt 15353873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 204
Target Start/End: Complemental strand, 46803594 - 46803515
Alignment:
Q  126 aaaatatgtataatcaatgcaatgaaatttgtaacatttgactttt-taaaaaatactttttaaatttaggatccttaaa 204  Q
    ||||||||| ||||||||||| ||||||| ||||| |||||||||| ||||||||||||| ||||||  | |||||||||    
T  46803594 aaaatatgtgtaatcaatgcattgaaattagtaacgtttgacttttataaaaaatactttctaaattaggaatccttaaa 46803515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 27004060 - 27004130
Alignment:
Q  136 taatcaatgcaatgaaatttgtaacatttgactttt-taaaaaatactttttaaatttaggatccttaaaa 205  Q
    ||||||||||| |||||||  |||||||| |||||| ||||||||| ||||||||||||||||| ||||||    
T  27004060 taatcaatgcattgaaattgataacatttaacttttttaaaaaatattttttaaatttaggatctttaaaa 27004130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 204
Target Start/End: Original strand, 43024927 - 43025019
Alignment:
Q  114 gtaaacttttat-aaaatatgtataatcaatgcaatgaaatttgtaacatttgactttttaaaa-aatactttttaaatttaggatccttaaa 204  Q
    ||||| |||||| |||||| || |||||| |||| |||||||||||| |||| | ||||| ||| |||| ||||||||| |||||||||||||    
T  43024927 gtaaatttttatgaaaatacgtgtaatcagtgcattgaaatttgtaatatttaatttttttaaataatattttttaaatataggatccttaaa 43025019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 45775911 - 45775857
Alignment:
Q  151 aatttgtaacatttgactttttaaaa-aatactttttaaatttaggatccttaaa 204  Q
    ||||||||||||||  |||||||||  |||| |||||||||||||||||||||||    
T  45775911 aatttgtaacatttatctttttaaaggaatattttttaaatttaggatccttaaa 45775857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 16790297 - 16790350
Alignment:
Q  151 aatttgtaacatttgactttt-taaaaaatactttttaaatttaggatccttaa 203  Q
    ||||| ||||||||||||||| ||||||| | ||| ||||||||||||||||||    
T  16790297 aatttataacatttgacttttttaaaaaagattttctaaatttaggatccttaa 16790350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 27542933 - 27542860
Alignment:
Q  132 tgtataatcaatgcaatgaaatttgtaacatttgactttttaaaa-aatactttttaaatttaggatccttaaa 204  Q
    |||||||||||| || || ||| ||||| |||||||||||| ||| |||| ||||||||||| | |||||||||    
T  27542933 tgtataatcaatacattggaatatgtaatatttgacttttttaaagaatattttttaaatttggtatccttaaa 27542860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 204
Target Start/End: Original strand, 353942 - 354080
Alignment:
Q  68 aaatgttaacgagtacccccatgatactatttaagaagattttatagtaaacttttataaaatatgtata--atcaatgcaatgaaatttgtaacatttg 165  Q
    |||||||||||||| || ||  || ||| |||||||| |||| ||| |||| |||||||||| || |||   |||| | || || ||||||||| |||||    
T  353942 aaatgttaacgagtgccaccgagacactttttaagaacatttaataataaatttttataaaaaatttatgttatcactacattgcaatttgtaatatttg 354041  T
Q  166 actttttaaaaaatactttttaaatttaggatccttaaa 204  Q
    ||||||||||||| |  || ||||||| |||||||||||    
T  354042 actttttaaaaaaaaaattctaaatttgggatccttaaa 354080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 4806466 - 4806568
Alignment:
Q  63 taggaaaatgttaacgagtacccccatgatactatttaagaagattttatagtaaacttttat-aaaatatgtataatcaatgcaatgaaatttgtaaca 161  Q
    |||| |||||||||||||| || ||  || ||| ||||||||   || |||||||  |||||| ||||||||| ||||||||| | ||||||||||||||    
T  4806466 tagggaaatgttaacgagttcctccgggacactctttaagaaccattaatagtaagtttttatgaaaatatgtgtaatcaatgtattgaaatttgtaaca 4806565  T
Q  162 ttt 164  Q
    |||    
T  4806566 ttt 4806568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 7341412 - 7341465
Alignment:
Q  151 aatttgtaacatttgacttttt-aaaaaatactttttaaatttaggatccttaa 203  Q
    |||| ||||||||||||||||| |||||||| ||| |||||||| |||||||||    
T  7341412 aattggtaacatttgactttttaaaaaaataatttataaatttaagatccttaa 7341465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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