View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18291_high_36 (Length: 289)
Name: NF18291_high_36
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_high_36 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] scaffold0576 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 4683724 - 4683976
Alignment:
| Q |
13 |
aatatcacagttcatgaaaacttggatccaatgttttaatttccatcatcattagaattgaggaaacttgtggtgttactcttggaatggtagatgctga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4683724 |
aatatcacagttcatgaaaacttggatccaatgttttgatttccatcatcattagaattgaggaaacttgtggtgttactcttggaatggtagatgctga |
4683823 |
T |
|
| Q |
113 |
gatatctatgttcagaattttcaattcacttcatatattggatccaaatttcttctcagcagtagacatatttgtagctaaataatccttttaaaaatgt |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
4683824 |
gatatctatgttcagaattttcaattcacttcatatattggatccaaatttcttctcagcaatagacatatttttagttaaataatccttttaaaaatgt |
4683923 |
T |
|
| Q |
213 |
caaactagaggtatgaaatgtgaaaacacacacagccataaggagagggacac |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4683924 |
caaactagaggtatgaaatgtgaaaacacacacagccataaggagagggacac |
4683976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 24712070 - 24712108
Alignment:
| Q |
79 |
cttgtggtgttactcttggaatggtagatgctgagatat |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
24712070 |
cttgtggtgttactcttagaatggtagatgctgaaatat |
24712108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 25640098 - 25639829
Alignment:
| Q |
13 |
aatatcacagttcatgaaaacttggatccaatgttttaatttccatcatcattagaattgaggaaacttgtggtgttactcttggaatggtagatgctga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25640098 |
aatatcacagttcatgaaaacttggatccaatgttttgatttccat-------agaattgaggaaacttgtggtgttgctcttggaatggtagatgctga |
25640006 |
T |
|
| Q |
113 |
gatatctatgttcagaattttcaattcacttcatatattggatccaaatttcttctcagcagtagacatatttgtagctaaataatccttttaaaaatgt |
212 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25640005 |
gatatatatgttcagaattttcaattcacttcatatattggatccaaatttcttctcagcagtagacatatttgtagttaaataatccttttaaaaatgt |
25639906 |
T |
|
| Q |
213 |
caaactagaggtatgaaatgtgaaaacacacacagccataaggagagggacacgctagtaagagataacaagaataa |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25639905 |
caaactagaggtatgaaatgtgaaaacacacacagccataaggagagggacacgctagtaagagataacaagaataa |
25639829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0576 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0576
Description:
Target: scaffold0576; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 8426 - 8244
Alignment:
| Q |
13 |
aatatcacagttcatgaaaacttggatccaatgttttaatttccatcatcattagaattgaggaaacttgtggtgttactcttggaatggtagatgctga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8426 |
aatatcacagttcatgaaaacttggatccaatgttttgatttccatcatcattagaattgaggaaacttgtggtgttactcttggaatggtagatgctga |
8327 |
T |
|
| Q |
113 |
gatatctatgttcagaattttcaattcacttcatatattggatccaaatttcttctcagcagtagacatatttgtagctaaat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8326 |
gatatctatgttcagaattttcaattcacttcatatattggatccaaatttcttctcagcagtagacatatttgtagctaaat |
8244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 15363655 - 15363473
Alignment:
| Q |
13 |
aatatcacagttcatgaaaacttggatccaatgttttaatttccatcatcattagaattgaggaaacttgtggtgttactcttggaatggtagatgctga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15363655 |
aatatcacagttcatgaaaacttggatccaatgttttgatttccatcatcattagaattgaggaaacttgtggtgttactcttggaatggtagatgctga |
15363556 |
T |
|
| Q |
113 |
gatatctatgttcagaattttcaattcacttcatatattggatccaaatttcttctcagcagtagacatatttgtagctaaat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15363555 |
gatatctatgttcagaattttcaattcacttcatatattggatccaaatttcttctcagcagtagacatatttgtagctaaat |
15363473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 13 - 195
Target Start/End: Original strand, 7405914 - 7406096
Alignment:
| Q |
13 |
aatatcacagttcatgaaaacttggatccaatgttttaatttccatcatcattagaattgaggaaacttgtggtgttactcttggaatggtagatgctga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7405914 |
aatatcacagttcatgaaaacttggatccaatgttttgatttccatcatcattagaattgaggaaacttgtggtgttactcttggaatggtagatgctga |
7406013 |
T |
|
| Q |
113 |
gatatctatgttcagaattttcaattcacttcatatattggatccaaatttcttctcagcagtagacatatttgtagctaaat |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7406014 |
gatatctatgttcagaattttcaattcacttcatatattggatccaaatttcttctcagcagtagacatatttgtagctaaat |
7406096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 31333294 - 31333326
Alignment:
| Q |
13 |
aatatcacagttcatgaaaacttggatccaatg |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
31333294 |
aatatcacagttcatgaaaacttggatccaatg |
31333326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 31340024 - 31340056
Alignment:
| Q |
13 |
aatatcacagttcatgaaaacttggatccaatg |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
31340024 |
aatatcacagttcatgaaaacttggatccaatg |
31340056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University