View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_high_43 (Length: 265)
Name: NF18291_high_43
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 254
Target Start/End: Original strand, 54425208 - 54425451
Alignment:
| Q |
2 |
ccgtgcatcgcacgtgttggattggagtctaaaaatgatctatctattactagggacgcagttccgtctaaatccaaacaatagaaggaacaaaaatgga |
101 |
Q |
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| T |
54425208 |
ccgtgcatcgcacgtgttgga-----gtctaaaaat----tatctattacaatggacgcagttccgtctaaatccaaacaatagaaggaacaaaaatgga |
54425298 |
T |
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| Q |
102 |
agaagaaagcgaagccgagtggggcgagttgactcgtgagtgcctcatcaatatcctatctcgactcagctttgacgatcaatggcgtggtgcgatgctt |
201 |
Q |
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| T |
54425299 |
agtagaaagcgaagccgagtggggcgagttgactcgtgagtgcctcatcaacatcctatctcgactcagctttgaagatcaatggcgcggttcgttgctt |
54425398 |
T |
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| Q |
202 |
gtttgcaaatcatggttcaacgccttcaaggaagaaccatctcttcactctgt |
254 |
Q |
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| T |
54425399 |
gtttgcaaatcatggttcaacgccttcaaggaagaaccatctcttcactctgt |
54425451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 121 - 252
Target Start/End: Complemental strand, 54430430 - 54430299
Alignment:
| Q |
121 |
tggggcgagttgactcgtgagtgcctcatcaatatcctatctcgactcagctttgacgatcaatggcgtggtgcgatgcttgtttgcaaatcatggttca |
220 |
Q |
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| T |
54430430 |
tggggcgagttatctcgagattgcctcatcaacatcttcattcgactcaccgttgaagatcaatggcgcggtgcaatgcttgtatgtaaatcatggttca |
54430331 |
T |
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| Q |
221 |
acgccttcaaggaagaaccatctcttcactct |
252 |
Q |
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| T |
54430330 |
gtgcctttaaggaagaaccttctcttcactct |
54430299 |
T |
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