View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_high_50 (Length: 216)
Name: NF18291_high_50
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_high_50 |
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| [»] scaffold0135 (1 HSPs) |
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Alignment Details
Target: scaffold0135 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: scaffold0135
Description:
Target: scaffold0135; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 46 - 200
Target Start/End: Original strand, 37132 - 37286
Alignment:
| Q |
46 |
agcttcttaagatgtccttgtttgttttataaattgagtattgattaggaaaaattgtaattttgatttggattgaaattgatggtgttgcaacttgcag |
145 |
Q |
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| T |
37132 |
agcttcttaagatgtccttgtttgttttataaattgagtattgattaggaaaaattgtaattttgatttggattgaaattgatggtgttgcaacttgcag |
37231 |
T |
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| Q |
146 |
gttaagactacaattcctgagaaatattatgttaggcctaatattggagttctgt |
200 |
Q |
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| T |
37232 |
gttaagactacaattcctgagaaatattgtgttaggcctaatattggagttctgt |
37286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 46 - 200
Target Start/End: Original strand, 9231266 - 9231420
Alignment:
| Q |
46 |
agcttcttaagatgtccttgtttgttttataaattgagtattgattaggaaaaattgtaattttgatttggattgaaattgatggtgttgcaacttgcag |
145 |
Q |
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| T |
9231266 |
agcttcttaagatgtccttgtttgttttataaattgagtattgattaggaaaaattgtaattttgatttggattgaaattgatggtgttgcaacttgcag |
9231365 |
T |
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| Q |
146 |
gttaagactacaattcctgagaaatattatgttaggcctaatattggagttctgt |
200 |
Q |
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| T |
9231366 |
gttaagactacaattcctgagaaatattgtgttaggcctaatattggagttctgt |
9231420 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 9169027 - 9168895
Alignment:
| Q |
64 |
tgtttgttttataaattgagtattgattaggaaaaattgtaattttgatttggattgaaattgatggtgttgcaacttgcaggttaagactacaattcct |
163 |
Q |
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| T |
9169027 |
tgtttgcttaataaattgagtgttatttaggaaaagctgtaattttgatttggattgaaattgatggtgttgcaacttgcaggttaaaactacaattcct |
9168928 |
T |
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| Q |
164 |
gagaaatattatgttaggcctaatattggagtt |
196 |
Q |
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| T |
9168927 |
gagaaatattgtgttaggcctaatattggagtt |
9168895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 64 - 200
Target Start/End: Original strand, 9256462 - 9256598
Alignment:
| Q |
64 |
tgtttgttttataaattgagtattgattaggaaaaattgtaattttgatttggattgaaattgatggtgttgcaacttgcaggttaagactacaattcct |
163 |
Q |
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| T |
9256462 |
tgtttgcttaataaattgagtgttatttaggaaaagttatgattatgagttggattgaaattgatggtgttgcaacttgcaggttaagactacaattcct |
9256561 |
T |
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| Q |
164 |
gagaaatattatgttaggcctaatattggagttctgt |
200 |
Q |
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| T |
9256562 |
gagaaatattgtgttaggcctaatattggagttctgt |
9256598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 9267153 - 9267250
Alignment:
| Q |
103 |
taattttgatttggattgaaattgatggtgttgcaacttgcaggttaagactacaattcctgagaaatattatgttaggcctaatattggagttctgt |
200 |
Q |
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| T |
9267153 |
taattttgatttggattgaaattgatggtgttgcaacttgcaggttaagactacagttcctgagaaatattgtgttaggcctaatattggagttctgt |
9267250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 106 - 195
Target Start/End: Original strand, 9155385 - 9155474
Alignment:
| Q |
106 |
ttttgatttggattgaaattgatggtgttgcaacttgcaggttaagactacaattcctgagaaatattatgttaggcctaatattggagt |
195 |
Q |
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| T |
9155385 |
ttttgatttgtattgaaattgatggtgttacaacttgcaggttaagactacaattcctgagaaatattgtgttaggcctaataatggagt |
9155474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 9310017 - 9309964
Alignment:
| Q |
143 |
caggttaagactacaattcctgagaaatattatgttaggcctaatattggagtt |
196 |
Q |
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| T |
9310017 |
caggttaagactacaaatccaaagaagtattgtgttaggcctaataatggagtt |
9309964 |
T |
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