View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18291_high_7 (Length: 596)
Name: NF18291_high_7
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 348 - 579
Target Start/End: Original strand, 31078053 - 31078284
Alignment:
| Q |
348 |
cttacaactccaacattaactttgtttggactctgatccgcaagaaaagcttcggtaactccgaggattggatccttaggagctggttcgatgttcctga |
447 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31078053 |
cttacaactccaacattaactttgtttggactctgatccgcaagaaaagcttcggtaactccgaggattggatccttaggagctggttcgatgttcctga |
31078152 |
T |
|
| Q |
448 |
accatgaagacatgaatctagctccggtgacggagctccggttgagaaattgtccgttgagaagattgcgaatcgccatggaaacagagaacagaggaaa |
547 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31078153 |
accatgaagacatgaatctagctccggtgacggagctccggttgagaaattgtccgttgagaagattgcgaatcgccatggaaacagagaacagaggaaa |
31078252 |
T |
|
| Q |
548 |
tgaaagcagaaaaaacagaatgtgttcactag |
579 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |
|
|
| T |
31078253 |
tgaaagaagaaaaaacagaatgtgttcactag |
31078284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 31077719 - 31077834
Alignment:
| Q |
1 |
atttgactcacatgaattggtttcctgcgatccttctctctgcttctctaacacattccaaaaccacaggctttccattgtcatcccgatatgcaccctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31077719 |
atttgactcacatgaattggtttcctgcgatccttctctctgcttctctaacacattccaaaaccacaggctttccattgtcatcccgatatgcaccctg |
31077818 |
T |
|
| Q |
101 |
ttataattttcaaatc |
116 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
31077819 |
ttataattttcaaatc |
31077834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 351 - 493
Target Start/End: Original strand, 31069442 - 31069584
Alignment:
| Q |
351 |
acaactccaacattaactttgtttggactctgatccgcaagaaaagcttcggtaactccgaggattggatccttaggagctggttcgatgttcctgaacc |
450 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||| || ||||||||||| | |||||| ||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
31069442 |
acaactccaacattgactttgtatggactctgatcagcgagaaaagcttccgcaactccaaggattggatccttaggagctggctcgatattcctgaacc |
31069541 |
T |
|
| Q |
451 |
atgaagacatgaatctagctccggtgacggagctccggttgag |
493 |
Q |
| |
|
| |||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
31069542 |
acgaagacatgaatctagctccggcaacgaagctccggttgag |
31069584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 181 - 263
Target Start/End: Original strand, 31077899 - 31077981
Alignment:
| Q |
181 |
atcgcacgaattataaatctgatgataaaaaacgatagaacagtgttgctatgttatggtattacattggatcatttcatttc |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31077899 |
atcgcacgaattataaatctgatgataaaaaacgatagaacagtgttgctatgttatggtattacattggatcatttcatttc |
31077981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 31069253 - 31069327
Alignment:
| Q |
2 |
tttgactcacatgaattggtttcctgcgatccttctctctgcttctctaacacattccaaaaccacaggctttcc |
76 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
31069253 |
tttgactcacatgaattggtttcctgcaattctcctctcagcttctctaacacattccaaaaccactggctttcc |
31069327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University