View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18291_high_9 (Length: 561)

Name: NF18291_high_9
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18291_high_9
NF18291_high_9
[»] chr4 (12 HSPs)
chr4 (1-559)||(36995860-36996417)
chr4 (397-511)||(36984961-36985072)
chr4 (1-559)||(36979961-36980542)
chr4 (224-332)||(36996934-36997042)
chr4 (211-321)||(36984800-36984910)
chr4 (392-490)||(36987316-36987413)
chr4 (211-327)||(36981031-36981147)
chr4 (423-508)||(36986129-36986214)
chr4 (218-331)||(37000716-37000829)
chr4 (67-332)||(36987039-36987292)
chr4 (30-94)||(37000597-37000658)
chr4 (408-468)||(36981239-36981299)


Alignment Details
Target: chr4 (Bit Score: 523; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 1 - 559
Target Start/End: Original strand, 36995860 - 36996417
Alignment:
Q  1 tggtttctattatggctgatgatgccgtctgacttgccacaatattagcataggttctctagcaccaacaacaatgacaacaaaaatcatgaccacatcc 100  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  36995860 tggtttctattatggctgatgatgccgtttgacttgccacaatattagcataggttctctagcaccaacaacaatgacaacaaaaatcatgaccacattc 36995959  T
Q  101 acacaattcatatatataattgtaactttgtaagcctaaacctttcacaaatgacctctaagcatgccttaactctacaattttaatttgttttaaggag 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36995960 acacaattcatatatataattgtaactttgtaagcctaaac-tttcacaaatgacctctaagcatgccttaactctacaattttaatttgttttaaggag 36996058  T
Q  201 attaagatttagtgaatatatgtatgaagccttactttctcggttgaaggaaattcctttttctcaatagcctccaaatctttgatgtctttgttctctg 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  36996059 attaagatttagtgaatatatgtatgaagccttactttctcggttgaaggaaattcctttttctcaatagcctccaaatccttgatgtctttgttctctg 36996158  T
Q  301 tttcgagtctttctccatttgcctgcacaagaagaaactcattaatcacttgaaatatgtcaccatgagactcggaaaggtagaatagactcatacaaga 400  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36996159 tttcgagtctttctccatttgcctgcacaagaagaaactcatcaatcacttgaaatatgtcaccatgagactcggaaaggtagaatagactcatacaaga 36996258  T
Q  401 actatatttaatgtcacaactgacttaacatcaaaactttaccttcagtatttctttattatcagtagtcatgattttatttgtcccttccgcatccttt 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||    
T  36996259 actatatttaatgtcacaactgacttaacatcaaaactttaccttcagtatttctttattatcagtagccatgatttcatttgtcccttctgcatccttt 36996358  T
Q  501 tgcttctgcagggtaggttgcttgtttgctatcgataaagcttcaatagtatctctgtg 559  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36996359 tgcttctgcagggtaggttgcttgtttgctatcgataaagcttcaatagtatctctgtg 36996417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 397 - 511
Target Start/End: Original strand, 36984961 - 36985072
Alignment:
Q  397 aagaactatatttaatgtcacaactgacttaacatcaaaactttaccttcagtatttctttattatcagtagtcatgattttatttgtcccttccgcatc 496  Q
    |||||||||||| ||| |||||||  |||||||||| |||||||||||| |||||||||||||||||||||||  |||||| |||| || |||| |||||    
T  36984961 aagaactatatt-aatttcacaac--acttaacatcgaaactttacctttagtatttctttattatcagtagttgtgatttcatttatcgcttctgcatc 36985057  T
Q  497 cttttgcttctgcag 511  Q
    |||||||||||||||    
T  36985058 cttttgcttctgcag 36985072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 1 - 559
Target Start/End: Original strand, 36979961 - 36980542
Alignment:
Q  1 tggtttctattatggctgatgatgccgtctgacttgccacaatattagcataggttctctagcaccaacaacaatgacaacaaaaatcatgaccacatcc 100  Q
    ||||||||| ||||| |||||||||| | |||||| | | ||||||||||||  |||| ||||||||||||||||| |||||||| ||||||||||||||    
T  36979961 tggtttctactatggttgatgatgccttttgacttacaaaaatattagcatacattctatagcaccaacaacaatg-caacaaaattcatgaccacatcc 36980059  T
Q  101 acacaattcatatatataattgta-------actttgtaagcctaaacctttcacaaatgacctctaagcatgccttaac-----tctacaattttaatt 188  Q
    | |||||| | | | | |   | |       || ||||||||||||| |||||||||||||||| | ||||||||| |||     |||| ||||||||||    
T  36980060 atacaatttacacacacatgcgcacgcgcgcac-ttgtaagcctaaaactttcacaaatgaccttttagcatgcctcaactcaggtctaaaattttaatt 36980158  T
Q  189 tgttttaaggagattaagattt--agtgaatatatgtatgaagccttactttctcggttgaaggaaattcctttttctcaatagcctccaaatctttgat 286  Q
    |||  |  | |||||   ||||  | |||||||||| || || |||||||| || ||||  || || ||| ||||| ||||||||||||||||  |||||    
T  36980159 tgtccttggaagatttctattttaaatgaatatatgaattaatccttacttgcttggttacagaaatttcttttttatcaatagcctccaaatacttgat 36980258  T
Q  287 gtctttgttctctgtttcgagtctttctccatttgcctgcacaagaag-aaactcattaatcacttgaaatatgtcaccatgagactcggaaaggtagaa 385  Q
    ||  || |||||||||| || |||||||||||||  ||||||||||||    ||||||||  | |  ||  |||||||||||||| | ||| | ||||||    
T  36980259 gttctttttctctgtttggaatctttctccatttttctgcacaagaagctccctcattaagtagtctaa--atgtcaccatgaga-tgggacatgtagaa 36980355  T
Q  386 -tagactcatacaagaact-----------atat---ttaatgtcacaactgacttaacatcaaaactttaccttcagtatttctttattatcagtagtc 470  Q
     | ||||||||||||||||           ||||   ||||| ||| |||  |||| ||||||||||||||||||  |||||| ||||||||||||||      
T  36980356 ttggactcatacaagaacttgtagcaagaaatatatattaatttcagaac--acttcacatcaaaactttaccttgggtatttttttattatcagtagct 36980453  T
Q  471 atgattttat---ttgtcccttccgcatccttttgcttctgcagggtaggttgcttgtttgctatcgataaagcttcaatagtatctctgtg 559  Q
    ||| ||||||   ||||| |||| ||| |||||||||||||| ||||||||||||| |||| |||   |||||||||| ||||||| |||||    
T  36980454 atggttttatttgttgtcgcttctgcacccttttgcttctgccgggtaggttgcttctttgatat---taaagcttcactagtatccctgtg 36980542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 224 - 332
Target Start/End: Original strand, 36996934 - 36997042
Alignment:
Q  224 atgaagccttactttctcggttgaaggaaattcctttttctcaatagcctccaaatctttgatgtctttgttctctgtttcgagtctttctccatttgcc 323  Q
    ||||||||||||||  | ||||| ||||| ||| |||||||||||||| ||||||||| |||||| |||||||||||||||| |||||||  |||||| |    
T  36996934 atgaagccttacttgtttggttgcaggaatttcttttttctcaatagcttccaaatctctgatgtatttgttctctgtttcgtgtctttcatcatttgtc 36997033  T
Q  324 tgcacaaga 332  Q
    |||||||||    
T  36997034 tgcacaaga 36997042  T

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Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 321
Target Start/End: Original strand, 36984800 - 36984910
Alignment:
Q  211 agtgaatatatgtatgaagccttactttctcggttgaaggaaattcctttttctcaatagcctccaaatctttgatgtctttgttctctgtttcgagtct 310  Q
    |||||||||||| ||||||| ||||||  | ||||| |||||  || |||| ||||||||||||||||||||||||||||||||  ||||||| ||||||    
T  36984800 agtgaatatatgaatgaagcgttacttgtttggttgcaggaatctctttttcctcaatagcctccaaatctttgatgtctttgtgttctgtttggagtct 36984899  T
Q  311 ttctccatttg 321  Q
     ||||||||||    
T  36984900 atctccatttg 36984910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 392 - 490
Target Start/End: Original strand, 36987316 - 36987413
Alignment:
Q  392 catacaagaactatatttaatgtcacaactgacttaacatcaaaactttaccttcagtatttctttattatcagtagtcatgattttatttgtcccttc 490  Q
    ||||||||||||||||| ||||||||||||||||||| || ||||||| ||||| || |||||||||||||||||||  ||||||| ||||||| ||||    
T  36987316 catacaagaactatatt-aatgtcacaactgacttaatattaaaacttcacctttagcatttctttattatcagtagctatgatttcatttgtcacttc 36987413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 211 - 327
Target Start/End: Original strand, 36981031 - 36981147
Alignment:
Q  211 agtgaatatatgtatgaagccttactttctcggttgaaggaaattcctttttctcaatagcctccaaatctttgatgtctttgttctctgtttcgagtct 310  Q
    |||||||||||| |||| ||||||||| || ||||| ||||| ||| |||||||||||||| |||||| ||| ||| ||||| | |||||||| ||| ||    
T  36981031 agtgaatatatgaatgaggccttacttgcttggttgcaggaatttcttttttctcaatagcttccaaaccttggatatctttttgctctgtttggagcct 36981130  T
Q  311 ttctccatttgcctgca 327  Q
    ||||||||||| |||||    
T  36981131 ttctccatttgtctgca 36981147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 423 - 508
Target Start/End: Original strand, 36986129 - 36986214
Alignment:
Q  423 acttaacatcaaaactttaccttcagtatttctttattatcagtagtcatgattttatttgtcccttccgcatccttttgcttctg 508  Q
    ||||||||||||||||||| ||| |||||||||||||| |||||||  ||||||| |||| || | || |||||||||||| ||||    
T  36986129 acttaacatcaaaactttatctttagtatttctttattttcagtagctatgatttcatttttcacctctgcatccttttgcctctg 36986214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 331
Target Start/End: Original strand, 37000716 - 37000829
Alignment:
Q  218 atatgtatgaagccttactttctcggttgaaggaaattcctttttctcaatagcctccaaatctttgatgtctttgttctctgtttcgagtctttctcca 317  Q
    ||||| ||||| |||||||| || |||||  ||||| ||  |||||||| ||||||||||||| |||||||| ||||  ||| ||| |||||||||||||    
T  37000716 atatgaatgaatccttacttgcttggttgggggaaaatctattttctcagtagcctccaaatccttgatgtccttgtattctatttggagtctttctcca 37000815  T
Q  318 tttgcctgcacaag 331  Q
    |||  |||||||||    
T  37000816 tttctctgcacaag 37000829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 67 - 332
Target Start/End: Original strand, 36987039 - 36987292
Alignment:
Q  67 aacaacaatgacaacaaaaatcatgaccacatccacacaattcatatatataattgtaactttgtaagcctaaacctttcacaaatgacctctaagcatg 166  Q
    ||||||||| |||||||||||| ||| |||||||||||| ||||||| ||           ||||||||||||| |||||||||||||||||| || |||    
T  36987039 aacaacaatcacaacaaaaatcgtgatcacatccacacatttcatatgtac----------ttgtaagcctaaatctttcacaaatgacctcttagaatg 36987128  T
Q  167 ccttaactctacaattttaatttgttttaaggagattaagatttagtgaatatatgtatgaagccttactttctcggttgaaggaaattcctttttctca 266  Q
    ||| || |||| |||||  |||||| |   |||||||   |||| | |   ||||| |||||| ||||||| || |   | ||||| | | |||||||||    
T  36987129 cctcaagtctaaaattt--atttgtctctgggagatttctatttggagcgaatatgaatgaagtcttacttgcttgaaagcaggaagtacttttttctca 36987226  T
Q  267 atagcctccaaatctttgatgtctttgttctctgtttcgagtctttctccatttgcctgcacaaga 332  Q
    | ||| ||| | |||||||||||||||| |||  ||| |||||||||| |||||| ||||||||||    
T  36987227 acagcgtccgagtctttgatgtctttgtgctcaatttggagtctttctgcatttgactgcacaaga 36987292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 37000597 - 37000658
Alignment:
Q  30 tgacttgccacaatattagcataggttctctagcaccaacaacaatgacaacaaaaatcatgacc 94  Q
    |||||||||||||||| |||||||||| ||||||||   |||||||| |||||||||||||||||    
T  37000597 tgacttgccacaatatcagcataggttgtctagcac---caacaatggcaacaaaaatcatgacc 37000658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 408 - 468
Target Start/End: Original strand, 36981239 - 36981299
Alignment:
Q  408 ttaatgtcacaactgacttaacatcaaaactttaccttcagtatttctttattatcagtag 468  Q
    ||||| |||||| ||||||| ||||||||||||||||| |  |||||||||| ||| ||||    
T  36981239 ttaatttcacaaatgacttagcatcaaaactttacctttaacatttctttatcatcggtag 36981299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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