View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_low_1 (Length: 983)
Name: NF18291_low_1
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 18 - 393
Target Start/End: Complemental strand, 37937628 - 37937245
Alignment:
| Q |
18 |
gttacaatcgtgcacatgttattgctcttggtgcttttctttgggctgccgctacgttcctcgttgccatctcatccacctttttacaggtcttcatttc |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37937628 |
gttacaatcgttcacatgttattgctcttggtgcttttctttgggctgccgctacgttcctcgttgccatctcatctacctttttacaggtcttcatttc |
37937529 |
T |
|
| Q |
118 |
tattt------tactcnnnnnnnc-gtcgttaattggtttctgaacaactattttggtctctcaacgtgtgtgatgtcttgtcattatagtttttt-agt |
209 |
Q |
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| T |
37937528 |
tatttctgttttactctttttttccgtcgttaattggtttctgaacaactattttggtctctcaacgtgtgtgatgtgttgtcattatagtttttttagt |
37937429 |
T |
|
| Q |
210 |
gtatccaaattaaaattactgacacatactcagtggtgtctccataggcggtcattttggttctcgaatatgtcttctgttgatcattttagtcattaga |
309 |
Q |
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|||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37937428 |
gtatccaaattaaaattactaacatatactcggtggtgtctccataggcggtcattttggttctcgaatatgtcttctgttgatcattttagtcattaga |
37937329 |
T |
|
| Q |
310 |
tgtgtttttccgttagtcgatatagtccataaaattacacacaaaagagacaacgggggtgtatttgcgattttgatatgttta |
393 |
Q |
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| T |
37937328 |
tgtgtttttccgttagtcgatatagtccataaaattacacacaaaagagacaacgggggtgtatttgcgattttgatatgttta |
37937245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 439 - 755
Target Start/End: Complemental strand, 37937250 - 37936933
Alignment:
| Q |
439 |
tgtttactctaattgaagtgctagctggaattagttgaactgttgaagttagttctatatagttgaagtcttaaaataagttgaagttagttctagataa |
538 |
Q |
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| T |
37937250 |
tgtttactctaattgaagtgctagctagaattagttgaactgttgaagttagttctatatagttgaagtcttaaaataagttgaagttagttctagataa |
37937151 |
T |
|
| Q |
539 |
ttgcaagttggttgcttttatttacaatttagttatgatttgttagtttagttagcatcactatataaaatcagcttttgtattctgtcaattataaata |
638 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37937150 |
ttgcaagttggttgcttttaattacaatttagttatgatttgttagtttagttagcatcactatataaaatcagcttttgtattctgtcaattataaata |
37937051 |
T |
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| Q |
639 |
atcannnnnnnctcaattgtcgtggtctgtctagaagaatctcccaaagctattatcagaacttattatgctta-ttttttaacagacacaaacatacaa |
737 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37937050 |
atcatttttttatcaattgtcgtggtctgtctagaagaatctcccaaagctattatcagaacttattatgcttatttttttaacagacacaaacatacaa |
37936951 |
T |
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| Q |
738 |
ccaaaatacatagcttac |
755 |
Q |
| |
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|||||||||||||||||| |
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| T |
37936950 |
ccaaaatacatagcttac |
37936933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 6e-55
Query Start/End: Original strand, 852 - 969
Target Start/End: Complemental strand, 37936937 - 37936820
Alignment:
| Q |
852 |
cttacaagtcagttagtggttgttagtaggtagttaatcatttttaatcaatttaatatttttcttaatatgaagcatcgtgggtatcaatatgctttct |
951 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37936937 |
cttacaagtcagttagtggttgttagtaggtagttaatcatttttaatcaatttaatatttttcttaatatgaagcatcgtgggtatcgatatgctttct |
37936838 |
T |
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| Q |
952 |
accttttgtatgcctatg |
969 |
Q |
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||||||||||||||||| |
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| T |
37936837 |
gccttttgtatgcctatg |
37936820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 37922351 - 37922264
Alignment:
| Q |
21 |
acaatcgtgcacatgttattgctcttggtgcttttctttgggctgccgctacgttcctcgttgccatctcatccacctttttacaggt |
108 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| || ||||| |
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| T |
37922351 |
acaatcgtgcacatgtcattgctcttggtgcttttctttgggctgccgctacattcctcgttgctgtctcctccaccttcttgcaggt |
37922264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 37925934 - 37925847
Alignment:
| Q |
21 |
acaatcgtgcacatgttattgctcttggtgcttttctttgggctgccgctacgttcctcgttgccatctcatccacctttttacaggt |
108 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||| || || |||||||| |||||||| |||||||| |||||||| |
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| T |
37925934 |
acaatcgtgcacatgttattgctctaggtgcttttctttgggctgctgccactttcctcgtcgccatctcctccaccttcttacaggt |
37925847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 26285244 - 26285317
Alignment:
| Q |
23 |
aatcgtgcacatgttattgctcttggtgcttttctttgggctgccgctacgttcctcgttgccatctcatccac |
96 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||| || || |||||| |||| ||||| |
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| T |
26285244 |
aatcgtgctcatgttattgctcttggtgcttttctttgggctgctgctacttttcttgttgccttctcctccac |
26285317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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