View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_low_11 (Length: 522)
Name: NF18291_low_11
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 84 - 505
Target Start/End: Complemental strand, 37256790 - 37256351
Alignment:
| Q |
84 |
tgcagcaatttccttccgactgctatggtaaagtaaaattagtatttaaagagaaacaagtgaattttggttttgtttgataatttctttgatacaaaac |
183 |
Q |
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| T |
37256790 |
tgcagcaatttccttccgactgctatggtaaagtaaaattagtatttaaagagaaacaagtgaattttggttttgtttgataatttctttgatacaaaac |
37256691 |
T |
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| Q |
184 |
accacaggcgtgagtatgaccccagcctaaagt----------gaagtcaagggagactcgtctgaagttaacgggtccttctttgattcttcctagttt |
273 |
Q |
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| T |
37256690 |
accacaggcgtgagtatgaccccagcctaaagtaaagtaaaatgaagtcaagggagactcgtctgaagttaacgggtccttctttgattcttcctagttt |
37256591 |
T |
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| Q |
274 |
tagtgtctctttccttggcccttcagagtaggtgttttagtgtctcaactttatgggaagcgtttttgacctgtttcaa--------tggttgtcaaact |
365 |
Q |
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| T |
37256590 |
tagtgtctctttccttggcccttcagagtaggtgttttagtgtctcaactttatgggaagcgtttttgaactgtttcaaactttcaatggttgtcaaact |
37256491 |
T |
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| Q |
366 |
tggcttttttcacttgtagaagctagaaaatgttgtttcaggcatattggttttcatcaattgaatcagttttcaaattgaaacccaaacatttctccaa |
465 |
Q |
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| T |
37256490 |
tggcttttttcacttgtagaagctagaaaatgttgtttcaggcatattggttttcatcaattgaatcagttttcaaattgaaacccaaacatttctccaa |
37256391 |
T |
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| Q |
466 |
cttcgagtgagatgttttcttgtagcaactagcaatgtga |
505 |
Q |
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| T |
37256390 |
cttcgagtgagatgttttcttgtagcaactagcaatgtga |
37256351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 37256846 - 37256801
Alignment:
| Q |
18 |
tctcttcaacagccaaacacaag-taatattcacacttaatggcag |
62 |
Q |
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| T |
37256846 |
tctcttcaacagccaaacacaagttaatattcacaattaatggcag |
37256801 |
T |
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