View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18291_low_12 (Length: 518)

Name: NF18291_low_12
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18291_low_12
NF18291_low_12
[»] chr5 (4 HSPs)
chr5 (38-502)||(7451173-7451637)
chr5 (446-500)||(7437786-7437839)
chr5 (41-74)||(34378326-34378359)
chr5 (38-74)||(18593471-18593507)
[»] chr8 (4 HSPs)
chr8 (38-74)||(16457292-16457328)
chr8 (38-74)||(20138655-20138691)
chr8 (34-71)||(36631055-36631092)
chr8 (38-74)||(9519728-9519764)
[»] chr7 (1 HSPs)
chr7 (38-74)||(44353380-44353416)
[»] chr3 (3 HSPs)
chr3 (38-74)||(47235926-47235962)
chr3 (38-74)||(2392323-2392359)
chr3 (38-74)||(2394087-2394123)
[»] chr4 (1 HSPs)
chr4 (34-74)||(20464818-20464858)
[»] chr1 (2 HSPs)
chr1 (38-74)||(5459389-5459425)
chr1 (38-74)||(24449747-24449783)


Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 38 - 502
Target Start/End: Complemental strand, 7451637 - 7451173
Alignment:
Q  38 cactgtaaacacggcatccaccaccgtccatcgtcacacacaagcacaagcaccgtaaaaacaaaaggtatctaattattatagttgattaattatacac 137  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  7451637 cactgcaaacacggtatccaccaccttccatcgtcacacacaagcacaagcaccttaaagacaaaaggtatctaattattatagttgattaattatacac 7451538  T
Q  138 aatgaactgtcaattttgttgtgttgtatatgtcacacacaaacaatacacttccatgtttccctccttccatactaatacctttcacgctagccattga 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7451537 aatgaactgtcaattttgttgtgttgtatatgtcacacacaaacaatacacttccatgtttccctccttccatactaatccctttcacgctagccattga 7451438  T
Q  238 ataaaatattactcccattactacgtgcttagtttaatatcagtggctatatcaattttttaagtaagtgtatatgcatggctgtgaactgaacgggtaa 337  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7451437 ataaaatattactcccattaccacgtgcttaatttaatatcagtggctatatcaattttttaagtaagtgtatatgcatggttgtgaactgaacgggtaa 7451338  T
Q  338 gcctccactgttcctttccttctttatgcttcacctatagctctagttttcaacaacccctaaattgcgccacaattcgggcattagcttaatttgttca 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7451337 gcctccactgttcctttccttctttatgcttcacctatagctctagttttcaacaacccctaaattgcgccacaattggggcattagcttaatttgttca 7451238  T
Q  438 tcactgtctagctctaacttcgaggttgagagactagagtggctcacacacccccacgaaatatg 502  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7451237 tcactgtctagctctaacttcgaggttgagagactagagtggctcacacacccccacgaaatatg 7451173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 446 - 500
Target Start/End: Complemental strand, 7437839 - 7437786
Alignment:
Q  446 tagctctaacttcgaggttgagagactagagtggctcacacacccccacgaaata 500  Q
    ||||||||||||| ||| |||| || |||||||||||||||| ||||||||||||    
T  7437839 tagctctaacttcaaggatgagggagtagagtggctcacaca-ccccacgaaata 7437786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 34378359 - 34378326
Alignment:
Q  41 tgtaaacacggcatccaccaccgtccatcgtcac 74  Q
    ||||||||||| ||||||||||||||||||||||    
T  34378359 tgtaaacacggtatccaccaccgtccatcgtcac 34378326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 18593507 - 18593471
Alignment:
Q  38 cactgtaaacacggcatccaccaccgtccatcgtcac 74  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  18593507 cactgtaaacacggtatccaccaccgcccatcgtcac 18593471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 16457292 - 16457328
Alignment:
Q  38 cactgtaaacacggcatccaccaccgtccatcgtcac 74  Q
    |||||||||||||| ||||||||||||||||||||||    
T  16457292 cactgtaaacacggtatccaccaccgtccatcgtcac 16457328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 20138691 - 20138655
Alignment:
Q  38 cactgtaaacacggcatccaccaccgtccatcgtcac 74  Q
    |||||||||||||| ||||||||||||||||||||||    
T  20138691 cactgtaaacacggtatccaccaccgtccatcgtcac 20138655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 36631092 - 36631055
Alignment:
Q  34 caaacactgtaaacacggcatccaccaccgtccatcgt 71  Q
    |||||||||||||||||| ||||||||||| |||||||    
T  36631092 caaacactgtaaacacggtatccaccaccgcccatcgt 36631055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 9519764 - 9519728
Alignment:
Q  38 cactgtaaacacggcatccaccaccgtccatcgtcac 74  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  9519764 cactgtaaacacggtatccaccaccgcccatcgtcac 9519728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 44353380 - 44353416
Alignment:
Q  38 cactgtaaacacggcatccaccaccgtccatcgtcac 74  Q
    |||||||||||||| ||||||||||||||||||||||    
T  44353380 cactgtaaacacggtatccaccaccgtccatcgtcac 44353416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 47235962 - 47235926
Alignment:
Q  38 cactgtaaacacggcatccaccaccgtccatcgtcac 74  Q
    |||||||||||||| ||||||||||||||||||||||    
T  47235962 cactgtaaacacggtatccaccaccgtccatcgtcac 47235926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 2392323 - 2392359
Alignment:
Q  38 cactgtaaacacggcatccaccaccgtccatcgtcac 74  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  2392323 cactgtaaacacggtatccaccaccgcccatcgtcac 2392359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 2394087 - 2394123
Alignment:
Q  38 cactgtaaacacggcatccaccaccgtccatcgtcac 74  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  2394087 cactgtaaacacggtatccaccaccgcccatcgtcac 2394123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 20464858 - 20464818
Alignment:
Q  34 caaacactgtaaacacggcatccaccaccgtccatcgtcac 74  Q
    ||||| |||||||||||| ||||||||||| ||||||||||    
T  20464858 caaaccctgtaaacacggtatccaccaccgcccatcgtcac 20464818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 74
Target Start/End: Complemental strand, 5459425 - 5459389
Alignment:
Q  38 cactgtaaacacggcatccaccaccgtccatcgtcac 74  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  5459425 cactgtaaacacggtatccaccaccgcccatcgtcac 5459389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 74
Target Start/End: Original strand, 24449747 - 24449783
Alignment:
Q  38 cactgtaaacacggcatccaccaccgtccatcgtcac 74  Q
    |||||||||||||| ||||||||||| ||||||||||    
T  24449747 cactgtaaacacggtatccaccaccgcccatcgtcac 24449783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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