View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_low_13 (Length: 514)
Name: NF18291_low_13
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 480; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 11 - 498
Target Start/End: Complemental strand, 39397940 - 39397453
Alignment:
| Q |
11 |
aagcaaaggctccaatgaatcttttttccgaaacataatcgaagagaggtgacgattgagaaactgaacaccattgccaatggacgatgagcgggttggt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39397940 |
aagcaaaggctccaatgaatcttttttccgaaacataatcgaagagaggtgacgattgagaaactgaacaccattgccaatggacgatgagcgggttggt |
39397841 |
T |
|
| Q |
111 |
cgaggaaatgaggcattaaatggctcaaaatcaagctctaatacataatgatcattatccctgttgtgtaaaataaaatcaaaccagtcatgaaaacagc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39397840 |
cgaggaaatgaggcattaaatggctcaaaatcaagctctaatacataatgatcattatccctgttgtgtaaaataaaatcaaaccagtcatgaaaacagc |
39397741 |
T |
|
| Q |
211 |
catgaagttactcttactccacatggtcagagagtttattgtctattgcataaactaagaaaagggtttctcacgttccatctacaagttcttctttgaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39397740 |
catgaagttactcttactccacatggtcagagagtttattgtctattgcataaactaagaaaagggtttctcacgttccatctacaagttcttctttgaa |
39397641 |
T |
|
| Q |
311 |
gcggagatattcagaaacacttaattgctccacactaagttcgaaaacatgcacacggacatattcccaaataccaggtcgtggacgaactgcaattgcc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39397640 |
gcggagatattcagaaacacttaattgctccacactaagttcgaaaacatgcacacggacatattcccaaataccaggccgtggacgaactgcaattgcc |
39397541 |
T |
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| Q |
411 |
acaaaaggaggcaaaactatggcttcctgccacaaaaatcatgttacacttttattaccatatttaatttaattttacagatgaagtg |
498 |
Q |
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| T |
39397540 |
acaaaaggaggcgaaactatggcttcctgccacaaaaatcatgttacacttttattaccatatttaatttaattttacagatgaagtg |
39397453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 277 - 459
Target Start/End: Original strand, 44518170 - 44518352
Alignment:
| Q |
277 |
tttctcacgttccatctacaagttcttctttgaagcggagatattcagaaacacttaattgctccacactaagttcgaaaacatgcacacggacatattc |
376 |
Q |
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||||| || ||||||||||||||||||||||||||| |||||||||||||| || |||||||| || | ||||| || |||| |||||||||||||| |
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| T |
44518170 |
tttcttactttccatctacaagttcttctttgaagctgagatattcagaaatgctcaattgctcgacgttgagttcaaagacattaacacggacatattc |
44518269 |
T |
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| Q |
377 |
ccaaataccaggtcgtggacgaactgcaattgccacaaaaggaggcaaaactatggcttcctgccacaaaaatcatgttacac |
459 |
Q |
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| T |
44518270 |
ccaaacaccgggtcttggacgaactgctattgccacaaaaggaggcaaaactatggcttcctgtcacaaaaataatgctacac |
44518352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 44517932 - 44518069
Alignment:
| Q |
11 |
aagcaaaggctccaatgaatcttttttccgaaacataatcgaagagaggtgacgattgagaaactgaacaccattgccaatggacgatgagcgggttggt |
110 |
Q |
| |
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|||||| || ||||| ||||||| || ||||||||| | || |||||||| || |||||||| || ||||||||||||||||| ||||| |||||||| |
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| T |
44517932 |
aagcaagggttccaagcaatctttgttgcgaaacatatttgacgagaggtggcggttgagaaattgcacaccattgccaatggatgatgaacgggttgga |
44518031 |
T |
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| Q |
111 |
cgaggaaatgaggcattaaatggctcaaaatcaagctc |
148 |
Q |
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||||| ||||| |||||||||||||| ||||| ||||| |
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| T |
44518032 |
cgagggaatgatgcattaaatggctctaaatctagctc |
44518069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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