View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_low_15 (Length: 499)
Name: NF18291_low_15
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 456
Target Start/End: Complemental strand, 22714166 - 22713710
Alignment:
| Q |
13 |
gagatgatcaacggtggttagagtagttttcaatagtcgtcattggtggtcgtagtgttggtcaaaggtgatctaaggtggttggagggatggttgactt |
112 |
Q |
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| T |
22714166 |
gagatgatcaacggtggttagagtagttttcaatagtcgtcattggtggtcgtagtgttggtcaaaggtgatctaaggtggttggagggatggttgactt |
22714067 |
T |
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| Q |
113 |
ggtcggtggtgatcagagaaatggtttgtggtggtcgtagtgttggtcgttgatggtcatcgatcgttggtggtaacatgttaacgttaaaataaataca |
212 |
Q |
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| T |
22714066 |
ggtcgatggtgatcagagaaatggtttttggtggtcgtagtgttggtcgttgatggtcatcgatcgttggtggtaacatgttaacgttaaaataaataca |
22713967 |
T |
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| Q |
213 |
agaattataaaccta--tttgtcgttttaagatttaagtgaaacctattttcaaattaagtnnnnnnnccaattcaaattcattttatcgaagcatgttt |
310 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| |
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| T |
22713966 |
agaattataaacctatttttgtggttttaagatttaagtgaaacctattttcaaattaagtaaaaaaaccaattcaaattcattttatccaaacatgttt |
22713867 |
T |
|
| Q |
311 |
tgttttcaaatttaccctttaaaatcaataacttataaccatcatgaacggctccttaattttgtccaagttattttttcaagt-----------acatt |
399 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22713866 |
tgttttcaaatttaacctttaaaatcaataacttataaccatcatgaacggctccttaattttgtccaagttattttttcaagtgcttgtttttctcatt |
22713767 |
T |
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| Q |
400 |
gattcttgcttggaatggtttaagcatgtaaaaaagaatgtaactatgtcattaatt |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22713766 |
gattcttgcttggaatggtttaagcatgtaaaaaagaatgtaactatgtccttaatt |
22713710 |
T |
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