View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_low_16 (Length: 494)
Name: NF18291_low_16
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 484
Target Start/End: Complemental strand, 45593224 - 45592775
Alignment:
| Q |
17 |
ataaattaacataaactaaaaagacaccaaatcacacatgaagaaaacacatagtaataataacacatcatattttgttgaccacaagcttgaacattgt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45593224 |
ataaattaacataaactaaaaagacaccaaatcacacatgaagaaaacacatagtaataataacacatcatattttgttgaccacaagcttgaacattgt |
45593125 |
T |
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| Q |
117 |
agcattagaaaagaccaaagagtttctttggagctgttccagttgccctgtattttgcagctatctcctctgctttgagtaaatcttcacctttctttgc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45593124 |
agcattagaaaagaccaaagagtttctttggagctgttccagttgccctgtattttgcagctatctcctctgctttgagtaaatcttcacctttctttgc |
45593025 |
T |
|
| Q |
217 |
ctcaatcatagccttcttttcttcagctgccttgtgaagtgctgctattttgtttttcaatttctctgcatattctccctttttcttctctagttgttcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45593024 |
ctcaatcatagccttcttttcttcagctgccttgtgaagtgctgctattttgtttttcaatttctctgcatattctccctttttcttctctagttgttcc |
45592925 |
T |
|
| Q |
317 |
tattcacagtgaaaagtaattaaagttaattgttcccccatattttgtcacattcaatcttatagttatataaataaaataagttcttacctcaagtttt |
416 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45592924 |
tattcacagtgaaaagtaattaaagttaattgttccctcatattttgtc------------------atataaataaaataagttcttacctcaagtttt |
45592843 |
T |
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| Q |
417 |
ctcaattcagcttctttagcagctttcttactgttctcccatgctgttatggttgaaagtcttctctg |
484 |
Q |
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| T |
45592842 |
ctcaattcagcttctttagcagctttcttactgttctcccatgctgttatggttgaaagtcttctctg |
45592775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 131 - 195
Target Start/End: Original strand, 11750196 - 11750260
Alignment:
| Q |
131 |
ccaaagagtttctttggagctgttccagttgccctgtattttgcagctatctcctctgctttgag |
195 |
Q |
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|||| ||||||||||||| | ||||| ||||| ||| |||||||||||| |||||||| ||||| |
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| T |
11750196 |
ccaaggagtttctttggaacagttcctgttgcattgtgttttgcagctatttcctctgccttgag |
11750260 |
T |
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