View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_low_17 (Length: 477)
Name: NF18291_low_17
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 32982532 - 32982277
Alignment:
| Q |
11 |
cagagaatgcaagagaggtacttgaagaagttggtaaggaaaatgtggaaactgcatgggatgcaacaaagaaaactgtacaattggtgacagagacaac |
110 |
Q |
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| T |
32982532 |
cagagaatgcaagagaggtacttgaagaagttggtaaggaaaatgtggaaactgcatgggatgcaacaaagaaaactgtacaattggtgactgagacaac |
32982433 |
T |
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| Q |
111 |
cacagctgaggctgatatgaatgttgtggacactgcggagtatagaagtagtgaagatttatcagggcaacttggagatggctgtgataagattcagtta |
210 |
Q |
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| T |
32982432 |
cacagctgaggctgatatgaatgttgtggacactgtggagtatagaagtagtgaagatttatcagggcaacttggagatggctgtgataagattcagtta |
32982333 |
T |
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| Q |
211 |
taattaatacatataggaattaataagagggtaatcccatcccatatctcctatgc |
266 |
Q |
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| T |
32982332 |
taattaatacatataggaattaataagagggtaatcccatcccatatctcctatgc |
32982277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 352 - 463
Target Start/End: Complemental strand, 32982240 - 32982129
Alignment:
| Q |
352 |
ttgttggatatgctttttcttgtctttgtttgtttggagatagagagccaattgaattatcttgagaaattacgtggcagaagaaaatttaacactaaaa |
451 |
Q |
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| T |
32982240 |
ttgttggatatgctttttcttgtctttgtttgtttggagatagagagccaattgaattatcttgagaaattacgtggtagaagaaaatttaacactaaaa |
32982141 |
T |
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| Q |
452 |
caatgtttggat |
463 |
Q |
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| T |
32982140 |
caatgtttggat |
32982129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 27038071 - 27037952
Alignment:
| Q |
32 |
ttgaagaagttggtaaggaaaatgtggaaactgcatgggatgcaacaaagaaaactgtacaattggtgacagagacaaccacagctgaggctgatatgaa |
131 |
Q |
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| T |
27038071 |
ttgaagaagttggtaaggaaaatgtggaaactgcatgggatgctacaaagaacactgtacaattggtgacagagacaaccactgctgaggctgatatgaa |
27037972 |
T |
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| Q |
132 |
tgttgtggacactgcggagt |
151 |
Q |
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| T |
27037971 |
tgccgtggacactgcggagt |
27037952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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