View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18291_low_2 (Length: 928)

Name: NF18291_low_2
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18291_low_2
NF18291_low_2
[»] chr8 (23 HSPs)
chr8 (708-838)||(19728703-19728833)
chr8 (457-653)||(44944178-44944371)
chr8 (1-113)||(16383376-16383478)
chr8 (1-113)||(24307792-24307894)
chr8 (1-113)||(34307215-34307317)
chr8 (479-653)||(44945857-44946028)
chr8 (1-113)||(16056400-16056502)
chr8 (1-112)||(30479473-30479574)
chr8 (1-112)||(15048181-15048281)
chr8 (1-113)||(32032724-32032825)
chr8 (63-113)||(24307628-24307678)
chr8 (1-110)||(10621086-10621185)
chr8 (63-112)||(1179991-1180040)
chr8 (63-112)||(34012347-34012396)
chr8 (1-58)||(42221559-42221616)
chr8 (1-112)||(12831047-12831148)
chr8 (1-112)||(15197333-15197434)
chr8 (1-53)||(40423942-40423994)
chr8 (7-62)||(32708010-32708065)
chr8 (63-112)||(504172-504221)
chr8 (1-58)||(14547966-14548023)
chr8 (1-58)||(43414580-43414637)
chr8 (516-589)||(44941073-44941146)
[»] chr7 (25 HSPs)
chr7 (1-113)||(22343360-22343462)
chr7 (1-113)||(41915740-41915842)
chr7 (1-113)||(38044196-38044298)
chr7 (2-113)||(7727905-7728006)
chr7 (1-112)||(32564425-32564526)
chr7 (1-112)||(8238212-8238314)
chr7 (1-58)||(35522920-35522977)
chr7 (66-112)||(40846167-40846213)
chr7 (63-113)||(10343614-10343664)
chr7 (63-113)||(18207179-18207229)
chr7 (12-58)||(46374812-46374858)
chr7 (1-113)||(7389388-7389490)
chr7 (64-113)||(8080435-8080484)
chr7 (1-58)||(19329886-19329943)
chr7 (62-113)||(11044187-11044238)
chr7 (78-113)||(12310905-12310940)
chr7 (63-113)||(36208172-36208222)
chr7 (63-113)||(36361964-36362014)
chr7 (63-113)||(36362025-36362075)
chr7 (1-58)||(3694411-3694468)
chr7 (1-58)||(21234445-21234502)
chr7 (12-53)||(26296693-26296734)
chr7 (63-112)||(35137533-35137582)
chr7 (1-58)||(38267084-38267141)
chr7 (63-112)||(39255974-39256023)
[»] chr6 (11 HSPs)
chr6 (1-113)||(15990041-15990143)
chr6 (1-113)||(30341359-30341461)
chr6 (1-112)||(15508023-15508124)
chr6 (1-112)||(4231548-4231649)
chr6 (1-113)||(31110760-31110860)
chr6 (1-58)||(31976292-31976349)
chr6 (1-105)||(32869685-32869779)
chr6 (63-107)||(22880709-22880753)
chr6 (63-107)||(28536537-28536581)
chr6 (1-58)||(17598598-17598655)
chr6 (63-112)||(31953081-31953130)
[»] chr5 (16 HSPs)
chr5 (1-113)||(3921264-3921366)
chr5 (1-113)||(2252167-2252269)
chr5 (1-113)||(39688896-39688998)
chr5 (1-112)||(28177775-28177876)
chr5 (1-107)||(18520883-18520979)
chr5 (1-58)||(15409609-15409666)
chr5 (63-112)||(33149689-33149738)
chr5 (1-112)||(26720516-26720617)
chr5 (1-112)||(26990265-26990366)
chr5 (63-107)||(36875654-36875698)
chr5 (63-113)||(36732993-36733043)
chr5 (4-58)||(42414304-42414358)
chr5 (13-58)||(6679742-6679787)
chr5 (1-58)||(13811696-13811753)
chr5 (63-112)||(35785199-35785248)
chr5 (63-112)||(35943943-35943992)
[»] chr4 (23 HSPs)
chr4 (1-113)||(19670715-19670817)
chr4 (300-402)||(22671367-22671469)
chr4 (1-113)||(47986207-47986309)
chr4 (1-113)||(32766957-32767059)
chr4 (1-113)||(50813891-50813993)
chr4 (1-113)||(55475190-55475292)
chr4 (1-94)||(17983742-17983825)
chr4 (4-113)||(29547961-29548060)
chr4 (1-112)||(55079712-55079814)
chr4 (1-58)||(29589739-29589796)
chr4 (1-112)||(8343162-8343263)
chr4 (1-112)||(18924494-18924595)
chr4 (63-112)||(6034044-6034093)
chr4 (63-112)||(11511513-11511562)
chr4 (1-58)||(29977929-29977986)
chr4 (1-58)||(31910236-31910293)
chr4 (63-112)||(40574779-40574828)
chr4 (1-58)||(41823926-41823983)
chr4 (1-113)||(48183048-48183150)
chr4 (1-113)||(50052427-50052529)
chr4 (183-258)||(22671236-22671308)
chr4 (63-113)||(480498-480548)
chr4 (1-59)||(42044366-42044424)
[»] chr1 (16 HSPs)
chr1 (1-112)||(50590999-50591100)
chr1 (1-112)||(41608492-41608593)
chr1 (1-113)||(5958999-5959101)
chr1 (1-113)||(32813246-32813348)
chr1 (63-112)||(3000319-3000368)
chr1 (2-113)||(2581914-2582015)
chr1 (1-112)||(47748443-47748543)
chr1 (63-113)||(38595153-38595203)
chr1 (63-112)||(9474927-9474976)
chr1 (1-58)||(26440778-26440835)
chr1 (1-58)||(27564734-27564791)
chr1 (1-58)||(37926437-37926494)
chr1 (1-58)||(44332370-44332427)
chr1 (63-112)||(47452371-47452420)
chr1 (2-58)||(3302533-3302589)
chr1 (1-53)||(49811526-49811578)
[»] chr2 (23 HSPs)
chr2 (4-112)||(43490121-43490219)
chr2 (1-113)||(45097734-45097836)
chr2 (1-113)||(13365350-13365454)
chr2 (1-112)||(38732354-38732455)
chr2 (1-112)||(40613901-40614002)
chr2 (1-94)||(2997486-2997569)
chr2 (1-113)||(9058479-9058581)
chr2 (1-58)||(42257237-42257294)
chr2 (1-52)||(3034982-3035033)
chr2 (1-107)||(28863460-28863556)
chr2 (63-113)||(26891555-26891605)
chr2 (63-113)||(33436151-33436201)
chr2 (1-58)||(38273141-38273198)
chr2 (1-53)||(36168885-36168937)
chr2 (1-107)||(19930819-19930915)
chr2 (67-113)||(30915462-30915508)
chr2 (4-53)||(2533172-2533221)
chr2 (1-58)||(10249381-10249438)
chr2 (1-58)||(13438387-13438444)
chr2 (63-112)||(17820055-17820104)
chr2 (1-58)||(28381654-28381711)
chr2 (1-58)||(33436255-33436312)
chr2 (63-112)||(40701478-40701527)
[»] chr3 (28 HSPs)
chr3 (269-382)||(990429-990540)
chr3 (269-402)||(1028393-1028524)
chr3 (1-112)||(45058552-45058652)
chr3 (269-366)||(1023501-1023596)
chr3 (1-58)||(36331328-36331385)
chr3 (321-366)||(1008473-1008518)
chr3 (183-262)||(1028549-1028628)
chr3 (1-58)||(11907415-11907472)
chr3 (1-58)||(20764914-20764971)
chr3 (1-113)||(27714890-27714992)
chr3 (1-58)||(51419359-51419416)
chr3 (1-112)||(26141531-26141632)
chr3 (1-53)||(47531914-47531966)
chr3 (1-112)||(53982011-53982112)
chr3 (66-113)||(36331432-36331479)
chr3 (63-113)||(11095404-11095454)
chr3 (63-113)||(33118902-33118952)
chr3 (63-109)||(42823114-42823160)
chr3 (63-113)||(49607413-49607463)
chr3 (63-112)||(8076393-8076442)
chr3 (63-112)||(14623890-14623939)
chr3 (1-58)||(31456733-31456790)
chr3 (1-58)||(41189763-41189820)
chr3 (63-108)||(52629304-52629349)
chr3 (1-53)||(11347921-11347973)
chr3 (63-107)||(13898106-13898150)
chr3 (1-112)||(33644200-33644301)
chr3 (63-113)||(54868946-54868996)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-99)||(152511-152599)


Alignment Details
Target: chr8 (Bit Score: 111; Significance: 2e-55; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 708 - 838
Target Start/End: Complemental strand, 19728833 - 19728703
Alignment:
Q  708 aactctaggggacttgacaatagcagaacacacaactcaatctaatgaacatgttttgaatactgtattatatcgtcgtggtgtttaacttgaaaattcg 807  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||||||| |||    
T  19728833 aactctaggggacttgacaatagcagaacatacaactcaatctaatgaacatgttttgaatactgtatcatatcgccatggtgtttaacttgaaaactcg 19728734  T
Q  808 aacaataaaaactcggtattttaaatttctg 838  Q
    |||||||||||||||||||||||||||||||    
T  19728733 aacaataaaaactcggtattttaaatttctg 19728703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 457 - 653
Target Start/End: Original strand, 44944178 - 44944371
Alignment:
Q  457 agaagtgctgtgaaatatgaaagatgtatcatcagaaatccatg--ctgctggcgaaaataccaatcagtgaacaaagtgtgattactgttgtagcaaga 554  Q
    |||||| || |||| |||| ||||||||||||||||| ||||||  ||||| || ||||| ||||| |||||||  | ||||||| ||||||||||||||    
T  44944178 agaagtactttgaagtatggaagatgtatcatcagaactccatgaactgctagcaaaaattccaataagtgaacttaatgtgattgctgttgtagcaaga 44944277  T
Q  555 agagttggtgccatgatattgttgcgaatagtttggatcagtccaccgaaaaaccgttcttgaagggatccagaaaatatagcagctgaattaatggaa 653  Q
    ||| | |  ||||||||||||||||| ||||||||||     || || ||| ||||||||||||||||||| ||||||||||||  |||||||||||||    
T  44944278 agattagacgccatgatattgttgcggatagtttgga-----cccccaaaacaccgttcttgaagggatcctgaaaatatagcaattgaattaatggaa 44944371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 16383478 - 16383376
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||          |||||||||||||||||| ||||||||||||||||||    
T  16383478 gagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtg----------ggtgtcaaggggtgtattgccacctaagggtgtttat 16383389  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  16383388 gtatcataactct 16383376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 24307792 - 24307894
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||||||||||||||| ||| | |||||||||||||||          ||||||||||| |||||| ||||||||||||||||||    
T  24307792 gagaaagtgtacttgtgcggggtccatatggccacatatcagatttttgtgtg----------ggtgtcaagggatgtattgccacctaagggtgtttat 24307881  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  24307882 gtatcataactct 24307894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 34307317 - 34307215
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||||||| ||||||  ||| |||||||||||||||||          |||||||||||||||||| ||||||||||||||||||    
T  34307317 gagaaagtgtacttgtgcggggttcatatgtccacatgtcagatttttgtgtg----------ggtgtcaaggggtgtattgccacctaagggtgtttat 34307228  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  34307227 gtatcataactct 34307215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 479 - 653
Target Start/End: Original strand, 44945857 - 44946028
Alignment:
Q  479 gatgtatcatcagaaatccatg--ctgctggcgaaaataccaatcagtgaacaaagtgtgattactgttgtagcaagaagagttggtgccatgatattgt 576  Q
    ||||||||||||||| |||| |  ||||| || ||||| ||||| |||||||  ||||||||  ||||||||| ||||||||| |  |||||||||||||    
T  44945857 gatgtatcatcagaactccacgaactgctagcaaaaattccaataagtgaacttagtgtgatagctgttgtagaaagaagagtagacgccatgatattgt 44945956  T
Q  577 tgcgaatagtttggatcagtccaccgaaaaaccgttcttgaagggatccagaaaatatagcagctgaattaatggaa 653  Q
    |||| || ||||||||     | || ||| |||||||||| |||||||| ||||||||||||  |||||||||||||    
T  44945957 tgcggattgtttggat-----cgccaaaacaccgttcttggagggatcctgaaaatatagcaattgaattaatggaa 44946028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 16056400 - 16056502
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||          |||||||||||| ||||||  ||| ||||| |||||||    
T  16056400 gagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgt----------gggtgtcaagggatgtattgtcacataaggatgtttat 16056489  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  16056490 gtatcataactct 16056502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 30479473 - 30479574
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||| ||||||||| | ||| |||||||||||| ||||          | |||||| ||||||||| ||||||||||||||||||    
T  30479473 gagaaagtgtacttgtgcgaggtccatatagccacatgtcagatttttatgtg----------gatgtcaaagggtgtattgccacctaagggtgtttat 30479562  T
Q  101 gtatcataactc 112  Q
    ||||||||||||    
T  30479563 gtatcataactc 30479574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 15048181 - 15048281
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| |||||||||||||||| |||  |||||||||||||||||||           |||||||| ||||||||| |||||||||| ||| |||    
T  15048181 gagaaagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgt-----------ggtgtcaaagggtgtattgccacctaaggatgtctat 15048269  T
Q  101 gtatcataactc 112  Q
    ||||||||||||    
T  15048270 gtatcataactc 15048281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 32032825 - 32032724
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||||||||||| || ||||||||| ||| ||||||||||||||||          || |||||| || |||||| ||||||||||||||||||    
T  32032825 gagaaagtgtacttgtgcaggatccatatggccacatgtcagatttttgtgt----------ggatgtcaa-ggatgtattgccacctaagggtgtttat 32032737  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  32032736 gtatcataactct 32032724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 24307678 - 24307628
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactct 113  Q
    ||||||||| || |||||| |||||||||||||||||||||||||||||||    
T  24307678 gggtgtcaatggatgtattgccacctaagggtgtttatgtatcataactct 24307628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 10621086 - 10621185
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| |||||||||| || || |||  ||||||||||||||||||||          |||||||| ||||||||| |||||||||| ||| |||    
T  10621086 gagaaagtgtgcttgtgcgggatcgatgtggctacgtgtcagatttttgtgtg----------ggtgtcaaagggtgtattaccacctaaggatgtctat 10621175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 1179991 - 1180040
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||| ||||    
T  1179991 gggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 1180040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 34012347 - 34012396
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||| ||||    
T  34012347 gggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 34012396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 42221616 - 42221559
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| |||||  |||||||||||| | |||||||||||||||||||| ||||    
T  42221616 gagaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgt 42221559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 12831148 - 12831047
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| |||||||||||||||  ||   ||||||||||||||||||||          |||||||| |||||||||  ||||||||||||| |||    
T  12831148 gagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtg----------ggtgtcaaagggtgtattgtcacctaagggtgtctat 12831059  T
Q  101 gtatcataactc 112  Q
    ||||||| ||||    
T  12831058 gtatcattactc 12831047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 15197434 - 15197333
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| |||||||||||||||  ||   |||||||||||||||||||          ||||||||| ||||||||| ||||||||| |||| |||    
T  15197434 gagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgt----------gggtgtcaaagggtgtattgccacctaagagtgtctat 15197345  T
Q  101 gtatcataactc 112  Q
    ||||||| ||||    
T  15197344 gtatcattactc 15197333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 40423942 - 40423994
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtg 53  Q
    |||||||||| ||||||||||||||| |||   ||||||||||||||||||||    
T  40423942 gagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtg 40423994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 62
Target Start/End: Original strand, 32708010 - 32708065
Alignment:
Q  7 gtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattg 62  Q
    ||||||||||||||||||||||| | ||| | |||||||||||| || ||||||||    
T  32708010 gtgtacttgtgcggggtccatatagccacatctcagatttttgtatgggtgtattg 32708065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 504172 - 504221
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    |||||||||  |||||||| |||||||||||||| |||||||||| ||||    
T  504172 gggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 504221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 14548023 - 14547966
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| |||||||||||||||  ||   |||||||||||||||||||| ||||    
T  14548023 gagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 14547966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 43414580 - 43414637
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| |||||||||| ||||| ||  ||||||| ||||||||||||| ||||    
T  43414580 gagaaagtgtgcttgtgcgggatccatgtgaccacgtgttagatttttgtgtgggtgt 43414637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 516 - 589
Target Start/End: Original strand, 44941073 - 44941146
Alignment:
Q  516 ccaatcagtgaacaaagtgtgattactgttgtagcaagaagagttggtgccatgatattgttgcgaatagtttg 589  Q
    ||||| |||||||  ||||||||| |||||||||| || ||||| | |||||| ||||||||||| || |||||    
T  44941073 ccaattagtgaacttagtgtgattgctgttgtagctagtagagtagatgccattatattgttgcggattgtttg 44941146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 4e-31; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 22343462 - 22343360
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||          ||||||||||||||||||| ||||||||||||||||||    
T  22343462 gagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgt----------gggtgtcaaggggtgtattgccacctaagggtgtttat 22343373  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  22343372 gtatcataactct 22343360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 41915842 - 41915740
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||           |||||||||||||||||| ||||||||||||||||||    
T  41915842 gagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgta----------ggtgtcaaggggtgtattgccacctaagggtgtttat 41915753  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  41915752 gtatcataactct 41915740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 38044298 - 38044196
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||||||||||||||||||||||||  || |||||||||||||||||          | |||||||||||||||| ||||||||||||||||||    
T  38044298 gagaaagtgtacttgtgcggggtccatatggctacatgtcagatttttgtgtg----------gatgtcaaggggtgtattgccacctaagggtgtttat 38044209  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  38044208 gtatcataactct 38044196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 7728006 - 7727905
Alignment:
Q  2 agaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttatg 101  Q
    |||||||||||||||||||||||||||||  ||| |||||||||||| ||||| |||          |||| |||||||| |||||||||||||||||||    
T  7728006 agaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttatgtgaatgt----------caagaggtgtattaccacctaagggtgtttatg 7727917  T
Q  102 tatcataactct 113  Q
    ||||||||||||    
T  7727916 tatcataactct 7727905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 32564425 - 32564526
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||| ||||||||||||||||| | ||| ||||||||||||||||          ||||||||||||||||||| |||||||||  |||||||    
T  32564425 gagaaagtgtatttgtgcggggtccatatagccacatgtcagatttttgtgt----------gggtgtcaaggggtgtattgccacctaagaatgtttat 32564514  T
Q  101 gtatcataactc 112  Q
    ||||||||||||    
T  32564515 gtatcataactc 32564526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 8238314 - 8238212
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccaccta-agggtgttta 99  Q
    ||||||||||||||||||||||||||||||   || ||||||||||||||||          ||||||||| ||||||||| ||||||| ||||||||||    
T  8238314 gagaaagtgtacttgtgcggggtccatatgactacatgtcagatttttgtgt----------gggtgtcaaagggtgtattgccacctacagggtgttta 8238225  T
Q  100 tgtatcataactc 112  Q
    |||||||||||||    
T  8238224 tgtatcataactc 8238212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 35522977 - 35522920
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| |||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  35522977 gagaaagtgtgcttgtgcgggatccatatggccacgtgtcagatttttgtgtgggtgt 35522920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 112
Target Start/End: Original strand, 40846167 - 40846213
Alignment:
Q  66 tgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||    
T  40846167 tgtcaaggggtgtattgccacctaaggatgtttatgtatcataactc 40846213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 10343614 - 10343664
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactct 113  Q
    ||||||||||  |||||||||||||||||||||| |||||||||| |||||    
T  10343614 gggtgtcaagatgtgtatttccacctaagggtgtctatgtatcattactct 10343664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 18207229 - 18207179
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactct 113  Q
    |||||||||| |||||||| |||||||||| ||| ||||||||||||||||    
T  18207229 gggtgtcaagaggtgtattgccacctaaggttgtctatgtatcataactct 18207179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 46374812 - 46374858
Alignment:
Q  12 cttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||||||||| ||| ||||||||||||||||||||| ||||    
T  46374812 cttgtgcggggtccatgtggccacgtgtcagatttttgtgtgggtgt 46374858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 7389490 - 7389388
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| |||||||||||||||  ||   ||||||||||||||||||||          |||||||| | ||||||| |||||||||||||| |||    
T  7389490 gagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtg----------ggtgtcaaagagtgtattgccacctaagggtgtctat 7389401  T
Q  101 gtatcataactct 113  Q
    ||||||| |||||    
T  7389400 gtatcattactct 7389388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 8080435 - 8080484
Alignment:
Q  64 ggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactct 113  Q
    |||||||| ||||||||| |||||||||||||| |||||||||| |||||    
T  8080435 ggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 8080484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 19329943 - 19329886
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| |||||||||||||||  || | |||||||||||||||||||| ||||    
T  19329943 gagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgt 19329886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 113
Target Start/End: Complemental strand, 11044238 - 11044187
Alignment:
Q  62 ggggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactct 113  Q
    |||||||||| || |||||| |||||||||||||| |||||||||| |||||    
T  11044238 ggggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactct 11044187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 113
Target Start/End: Complemental strand, 12310940 - 12310905
Alignment:
Q  78 tatttccacctaagggtgtttatgtatcataactct 113  Q
    ||||||||||||||||||| ||||||||||||||||    
T  12310940 tatttccacctaagggtgtctatgtatcataactct 12310905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 36208222 - 36208172
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactct 113  Q
    ||||||||| |  |||||| |||||||||||||| ||||||||||||||||    
T  36208222 gggtgtcaatgaatgtattaccacctaagggtgtctatgtatcataactct 36208172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 36361964 - 36362014
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactct 113  Q
    ||||||||| || |||||| |||||||||||||| |||||||||| |||||    
T  36361964 gggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactct 36362014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 36362075 - 36362025
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactct 113  Q
    ||||||||| || |||||| |||||||||||||| |||||||||| |||||    
T  36362075 gggtgtcaaaggatgtattaccacctaagggtgtctatgtatcattactct 36362025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 3694468 - 3694411
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| |||||||||| |||| |||   |||||||||||||||||||| ||||    
T  3694468 gagaaagtgtgcttgtgcgggatccacatgactacgtgtcagatttttgtgtgggtgt 3694411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 21234502 - 21234445
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||| ||| |||||||||||| ||| |||  |||||||| ||||||||||||||||    
T  21234502 gagaaaatgtgcttgtgcggggtacatgtggctacgtgtcaaatttttgtgtgagtgt 21234445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 26296734 - 26296693
Alignment:
Q  12 cttgtgcggggtccatatggtcacgtgtcagatttttgtgtg 53  Q
    |||||||||||||||||||| ||||| |||||||||| ||||    
T  26296734 cttgtgcggggtccatatggccacgtatcagatttttatgtg 26296693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 35137582 - 35137533
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    ||||||||| ||||||||| |||||||||||||| ||| |||||| ||||    
T  35137582 gggtgtcaaagggtgtattgccacctaagggtgtctatttatcattactc 35137533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 38267141 - 38267084
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| |||||||||||||||  ||   |||||||||||||||||||| ||||    
T  38267141 gagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 38267084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 39255974 - 39256023
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    |||| ||||| |||||||| |||||||||| ||| |||||||||||||||    
T  39255974 gggtatcaagtggtgtattgccacctaaggttgtctatgtatcataactc 39256023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 1e-28; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 15990041 - 15990143
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||          |||||||||||||||||| ||||||||||||||||||    
T  15990041 gagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtg----------ggtgtcaaggggtgtattgccacctaagggtgtttat 15990130  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  15990131 gtatcataactct 15990143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 30341359 - 30341461
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||          |||||||||||||||||| ||||||||||||||||||    
T  30341359 gagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtg----------ggtgtcaaggggtgtattgccacctaagggtgtttat 30341448  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  30341449 gtatcataactct 30341461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 15508023 - 15508124
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||          ||||||||||||||||||| ||||||||||||||||||    
T  15508023 gagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgt----------gggtgtcaaggggtgtattgccacctaagggtgtttat 15508112  T
Q  101 gtatcataactc 112  Q
    ||||||||||||    
T  15508113 gtatcataactc 15508124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 4231649 - 4231548
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||          ||||| ||||||||||||| |||||||| | |||||||    
T  4231649 gagaaagtgtacttgtgcggggtccatatggccacgtgtcagatttttgtgt----------gggtggcaaggggtgtattgccacctaatgatgtttat 4231560  T
Q  101 gtatcataactc 112  Q
    | ||||||||||    
T  4231559 gaatcataactc 4231548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 31110760 - 31110860
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| ||||||| |||||||| |||| |||||||||||||||||            | ||||||| ||||||||| |||||||||| ||| |||    
T  31110760 gagaaagtgtgcttgtgcagggtccatgtggttacgtgtcagatttttgt------------gagtgtcaaagggtgtattgccacctaaggatgtctat 31110847  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  31110848 gtatcataactct 31110860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31976349 - 31976292
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| |||||||||||| ||| ||  ||||||||||||||||||||| ||||    
T  31976349 gagaaagtgtgcttgtgcggggttcatgtgaccacgtgtcagatttttgtgtgggtgt 31976292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 32869779 - 32869685
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| |||||||||||||||  ||   ||||||||||||||||||||          |||||||| ||||||||| |||||||||||||| |||    
T  32869779 gagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtg----------ggtgtcaaagggtgtattgccacctaagggtgtctat 32869690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 22880709 - 22880753
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcat 107  Q
    ||||||||| ||||||||| |||||||||||||| ||||||||||    
T  22880709 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 22880753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 28536537 - 28536581
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcat 107  Q
    |||||||||||| |||||| |||||||||| ||||||||||||||    
T  28536537 gggtgtcaagggttgtattgccacctaaggatgtttatgtatcat 28536581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 17598655 - 17598598
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| |||||||||||||||  ||   |||||||||||||||||||| ||||    
T  17598655 gagaaagtgtgcttgtgcggggtccacgtgacaacgtgtcagatttttgtgtgggtgt 17598598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 31953081 - 31953130
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    ||||||||||||||||||| |||||||||| ||| ||| |||||| ||||    
T  31953081 gggtgtcaaggggtgtattgccacctaaggatgtctatctatcattactc 31953130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 1e-28; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 3921264 - 3921366
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||||||          |||||||||||||||||| ||||||||||||||||||    
T  3921264 gagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtg----------ggtgtcaaggggtgtattgccacctaagggtgtttat 3921353  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  3921354 gtatcataactct 3921366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 2252167 - 2252269
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||          ||||||||||||||||||| |||||||||| |||||||    
T  2252167 gagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgt----------gggtgtcaaggggtgtattgccacctaaggatgtttat 2252256  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  2252257 gtatcataactct 2252269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 39688896 - 39688998
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||||||| |||||||| ||||||  ||| | |||||||||||||||          ||||||||||| |||||| |||| |||||||||||||    
T  39688896 gagaaagtgtacttatgcggggttcatatgaccacatatcagatttttgtgtg----------ggtgtcaagggatgtattgccacttaagggtgtttat 39688985  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  39688986 gtatcataactct 39688998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 28177876 - 28177775
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||  ||||||||||||||| ||  |||||||||||||||||||||          |||||||| ||||||||| |||||||||| ||| |||    
T  28177876 gagaaagtgtgtttgtgcggggtccatgtgaccacgtgtcagatttttgtgtg----------ggtgtcaaagggtgtattgccacctaaggatgtctat 28177787  T
Q  101 gtatcataactc 112  Q
    ||||||||||||    
T  28177786 gtatcataactc 28177775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 18520883 - 18520979
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| |||||||||||||||  ||   ||||||||||||||||||||          |||||||| ||||||||| |||||||||||||| |||    
T  18520883 gagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtg----------ggtgtcaaagggtgtattgccacctaagggtgtctat 18520972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 15409609 - 15409666
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||| ||||| |||||||||||||||| |||  |||||||||||||||||||| ||||    
T  15409609 gagagagtgtgcttgtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgt 15409666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 33149689 - 33149738
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||| ||||    
T  33149689 gggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 33149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 26720617 - 26720516
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| |||||||||| ||||| ||| |||||||||||||||| |||           ||||| || ||||||||| |||||||||| ||| |||    
T  26720617 gagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgt----------aggtgttaaagggtgtattgccacctaaggatgtctat 26720528  T
Q  101 gtatcataactc 112  Q
    ||||||||||||    
T  26720527 gtatcataactc 26720516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 26990366 - 26990265
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| |||||||||| ||||| ||| |||||||||||||||| |||           ||||| || ||||||||| |||||||||| ||| |||    
T  26990366 gagaaagtgtgcttgtgcgggatccatgtggccacgtgtcagatttttttgt----------aggtgttaaagggtgtattgccacctaaggatgtctat 26990277  T
Q  101 gtatcataactc 112  Q
    ||||||||||||    
T  26990276 gtatcataactc 26990265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 36875654 - 36875698
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcat 107  Q
    ||||||||| ||||||||| |||||||||||||| ||||||||||    
T  36875654 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcat 36875698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 36732993 - 36733043
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactct 113  Q
    ||||||||| ||||||||| | |||||||||||| |||||||||| |||||    
T  36732993 gggtgtcaaagggtgtattgctacctaagggtgtctatgtatcattactct 36733043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 42414304 - 42414358
Alignment:
Q  4 aaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    ||||||| ||||||||||||||| |||   |||||||||||||||||||| ||||    
T  42414304 aaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgt 42414358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 6679787 - 6679742
Alignment:
Q  13 ttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    ||||||||||||||| ||  ||||||||||||||||||||| ||||    
T  6679787 ttgtgcggggtccatgtgaccacgtgtcagatttttgtgtgggtgt 6679742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 13811753 - 13811696
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| |||||||||||||||  ||   |||||||||||||||||||| ||||    
T  13811753 gagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 13811696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 35785248 - 35785199
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    |||||||||  |||||||| |||||||||||||| |||||||||| ||||    
T  35785248 gggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 35785199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 35943943 - 35943992
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    |||||||||  | |||||| |||||||||||||| |||||||||||||||    
T  35943943 gggtgtcaaatgatgtattgccacctaagggtgtctatgtatcataactc 35943992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 1e-28; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 19670715 - 19670817
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||          ||||||||||||||||| ||||||||||||||||||    
T  19670715 gagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtga----------gtgtcaaggggtgtattgccacctaagggtgtttat 19670804  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  19670805 gtatcataactct 19670817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 300 - 402
Target Start/End: Original strand, 22671367 - 22671469
Alignment:
Q  300 caactacttgaagtttcttagctatttggagtttctttaccacttctcttgatgatcttgataggacttaatcttcttgatacggacttgctatggataa 399  Q
    |||||||||||| ||||||||||||||||||||||||||| |||  | |||||||||||||| ||||||||  ||||||| || ||||||||| ||||||    
T  22671367 caactacttgaattttcttagctatttggagtttctttacaactcttattgatgatcttgattggacttaactttcttgaaaccgacttgctaaggataa 22671466  T
Q  400 taa 402  Q
    |||    
T  22671467 taa 22671469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 47986309 - 47986207
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||          || ||||||||| |||||| ||||||||||||||||||    
T  47986309 gagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgt----------ggatgtcaagggatgtattgccacctaagggtgtttat 47986220  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  47986219 gtatcataactct 47986207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 32767059 - 32766957
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||||||||||| |||||||||||| ||| |||||||||||||| ||          |||||||||||||||||| ||||||||| ||||||||    
T  32767059 gagaaagtgtacttgtgcagggtccatatggccacatgtcagatttttgtatg----------ggtgtcaaggggtgtattgccacctaagagtgtttat 32766970  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  32766969 gtatcataactct 32766957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 50813891 - 50813993
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||||||| ||||||  ||| |||||||||||||||||          |||||||||||||||||| ||||||||| ||||||||    
T  50813891 gagaaagtgtacttgtgcggggttcatatgaccacatgtcagatttttgtgtg----------ggtgtcaaggggtgtattaccacctaagagtgtttat 50813980  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  50813981 gtatcataactct 50813993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 55475292 - 55475190
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||||||| ||| |||||||||||| ||| |||||||||||||||||          |||||||| ||||||||| |||||||||| |||||||    
T  55475292 gagaaagtgtacttatgcagggtccatatggccacatgtcagatttttgtgtg----------ggtgtcaaagggtgtattgccacctaaggatgtttat 55475203  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  55475202 gtatcataactct 55475190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 17983742 - 17983825
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggt 94  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||          ||||||||||||||||||| ||||||||||||    
T  17983742 gagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgt----------gggtgtcaaggggtgtattgccacctaagggt 17983825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 4 - 113
Target Start/End: Original strand, 29547961 - 29548060
Alignment:
Q  4 aaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttatgta 103  Q
    ||||||||||| |||||| ||||||||| ||| |||||||||||||||||          ||||||||||| |||||| |||||||||| ||||||||||    
T  29547961 aaagtgtacttatgcgggatccatatggccacatgtcagatttttgtgtg----------ggtgtcaagggatgtattgccacctaaggatgtttatgta 29548050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 55079712 - 55079814
Alignment:
Q  1 gagaaagtgtacttgtgcgggg-tccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgttta 99  Q
    ||||||||||||||||| |||| ||||||||| ||| |||||||||||||| ||          ||||||||| |||||||| |||||||||||||||||    
T  55079712 gagaaagtgtacttgtgtgggggtccatatggccacatgtcagatttttgtatg----------ggtgtcaagaggtgtattgccacctaagggtgttta 55079801  T
Q  100 tgtatcataactc 112  Q
    |||||||||||||    
T  55079802 tgtatcataactc 55079814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 29589739 - 29589796
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    ||||||||||||||||| ||||||||||||| ||| | ||||||||||||||| ||||    
T  29589739 gagaaagtgtacttgtgtggggtccatatggccacatatcagatttttgtgtgggtgt 29589796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 8343162 - 8343263
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||| ||||| |||||||||||||||| ||| |||||||||||| |||           |||||||| || |||||| |||||||||| |||||||    
T  8343162 gagaaagtatacttatgcggggtccatatggccacatgtcagatttttatgta----------ggtgtcaaaggatgtattgccacctaaggatgtttat 8343251  T
Q  101 gtatcataactc 112  Q
    ||||||||||||    
T  8343252 gtatcataactc 8343263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 18924494 - 18924595
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||||||||||||| || ||||| | ||| ||||||||||||||||          || | |||||||||||||| |||||||||||| |||||    
T  18924494 gagaaagtgtacttgtgcggagttcatattgccacatgtcagatttttgtgt----------ggatatcaaggggtgtattgccacctaagggtatttat 18924583  T
Q  101 gtatcataactc 112  Q
    | ||||||||||    
T  18924584 ggatcataactc 18924595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 6034093 - 6034044
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||| ||||    
T  6034093 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 6034044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 11511513 - 11511562
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||| ||||    
T  11511513 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 11511562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 29977986 - 29977929
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| |||||| ||||||||||||   |||||||||||||||||||| ||||    
T  29977986 gagaaagtgtgcttgtgtggggtccatatgactacgtgtcagatttttgtgtgggtgt 29977929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31910293 - 31910236
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| |||||||||||||||| |||  | |||||||||||||||||| ||||    
T  31910293 gagaaagtgtgcttgtgcggggtccatgtggctatgtgtcagatttttgtgtgggtgt 31910236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 40574828 - 40574779
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    ||||||||| ||||||||| |||||||||| ||| |||||||||||||||    
T  40574828 gggtgtcaaagggtgtattaccacctaaggatgtctatgtatcataactc 40574779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 41823983 - 41823926
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| |||||||||||||||| ||   |||||||||||||||||||| ||||    
T  41823983 gagaaagtgtgcttgtgcggggtccatgtgactacgtgtcagatttttgtgtgggtgt 41823926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 48183048 - 48183150
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| |||||||||||||||  ||   |||||||||||||||||||          ||||||||| ||||||||| |||| ||||||||| |||    
T  48183048 gagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgt----------gggtgtcaaagggtgtattgccacgtaagggtgtctat 48183137  T
Q  101 gtatcataactct 113  Q
    ||||||| |||||    
T  48183138 gtatcattactct 48183150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 50052427 - 50052529
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| |||||||||||||||  ||   |||||||||||||||||||          ||||||||| ||||||||| |||||||||| ||| |||    
T  50052427 gagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgt----------gggtgtcaaagggtgtattgccacctaaggatgtctat 50052516  T
Q  101 gtatcataactct 113  Q
    ||||||| |||||    
T  50052517 gtatcattactct 50052529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 22671236 - 22671308
Alignment:
Q  183 acacttgcttcctaaccttcatgtgcagcaaaataatgatttttgaatcatgctttgacattaaaacatggcttgg 258  Q
    ||||||||||||||||  |||||||||||||| |||  | ||| |||||| |||| ||||||||||||||||||||    
T  22671236 acacttgcttcctaac--tcatgtgcagcaaagtaacaaattt-gaatcacgcttcgacattaaaacatggcttgg 22671308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 480498 - 480548
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactct 113  Q
    ||||||||| |||||||||  ||||||||||||| |||||||||| |||||    
T  480498 gggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactct 480548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 42044366 - 42044424
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgta 59  Q
    |||||||||| |||||||||||||||  ||   |||||||||||||||||||| |||||    
T  42044366 gagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgta 42044424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 4e-28; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 50590999 - 50591100
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||          ||||||||||||||||||| ||||||||||||||||||    
T  50590999 gagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgt----------gggtgtcaaggggtgtattgccacctaagggtgtttat 50591088  T
Q  101 gtatcataactc 112  Q
    ||||||||||||    
T  50591089 gtatcataactc 50591100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 41608492 - 41608593
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||||||||| |||||||||||||| ||| ||||||||||||||||||          ||||||||||||||||| |||||||||| |||||||    
T  41608492 gagaaagtgtacttgtacggggtccatatggccacatgtcagatttttgtgtga----------gtgtcaaggggtgtattgccacctaaggatgtttat 41608581  T
Q  101 gtatcataactc 112  Q
    ||||||||||||    
T  41608582 gtatcataactc 41608593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 5958999 - 5959101
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||||||||          |||||||||| |||||||| |||| |||||||||||||    
T  5958999 gagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgt----------gggtgtcaagaggtgtattgccacttaagggtgtttat 5959088  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  5959089 gtatcataactct 5959101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 32813348 - 32813246
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| |||||||||||||||| ||  ||||||||||||||||||||          |||||| || ||||||||| |||||||||| ||| |||    
T  32813348 gagaaagtgtgcttgtgcggggtccatgtgaccacgtgtcagatttttgtgt----------gggtgttaaagggtgtattgccacctaaggatgtctat 32813259  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  32813258 gtatcataactct 32813246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 3000368 - 3000319
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    ||||||||| ||||||||| ||||||||||||||||||||||||| ||||    
T  3000368 gggtgtcaaagggtgtattgccacctaagggtgtttatgtatcattactc 3000319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 2582015 - 2581914
Alignment:
Q  2 agaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttatg 101  Q
    ||||||||| |||||||||||||||  ||   ||||||||||||||||||||          |||||||| ||||||||| |||||||||||||| ||||    
T  2582015 agaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtg----------ggtgtcaaagggtgtattgccacctaagggtgtctatg 2581926  T
Q  102 tatcataactct 113  Q
    |||||| |||||    
T  2581925 tatcattactct 2581914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 47748543 - 47748443
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||| |||||||||||| ||||||||| ||| |||||||||||| | ||          ||||||||||| |||||| |||||||||||| |||||    
T  47748543 gagaaagtatacttgtgcgggatccatatggccacatgtcagatttttatatg----------ggtgtcaaggg-tgtattgccacctaagggtatttat 47748455  T
Q  101 gtatcataactc 112  Q
    ||||||||||||    
T  47748454 gtatcataactc 47748443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 38595203 - 38595153
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactct 113  Q
    ||||||||| ||||||||| |||||||| |||||||||||||||| |||||    
T  38595203 gggtgtcaaagggtgtattgccacctaaaggtgtttatgtatcattactct 38595153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 9474927 - 9474976
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||| ||||    
T  9474927 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactc 9474976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 26440835 - 26440778
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| ||| |||||| ||||| ||| ||||||||||||||||||||| ||||    
T  26440835 gagaaagtgtgcttatgcgggatccatgtggccacgtgtcagatttttgtgtgggtgt 26440778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 27564734 - 27564791
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| |||||||||||||||  || | |||||||||||||||||||| ||||    
T  27564734 gagaaagtgtgcttgtgcggggtccacgtgattacgtgtcagatttttgtgtgggtgt 27564791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 37926437 - 37926494
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||||||||| |||| ||||| ||| |||||||||||||||| |||| ||||    
T  37926437 gagaaagtgtacttgtacgggatccatgtggccacgtgtcagatttttatgtgggtgt 37926494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 44332370 - 44332427
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||| ||||||||||||||||||| || ||| |||||||||||| |||| ||||    
T  44332370 gagaaagtatacttgtgcggggtccatagggccacatgtcagatttttatgtgggtgt 44332427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 47452371 - 47452420
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||| ||||    
T  47452371 gggtgtcaaagggtgtattaccacctaagggtgtctatgtatcattactc 47452420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 3302533 - 3302589
Alignment:
Q  2 agaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    ||||||||| |||||  |||||||||||| | |||||||||||||||||||| ||||    
T  3302533 agaaagtgtgcttgtatggggtccatatgattacgtgtcagatttttgtgtgggtgt 3302589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 49811526 - 49811578
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtg 53  Q
    |||||||||| ||||||||| ||| ||||||  ||||||||||||||||||||    
T  49811526 gagaaagtgtgcttgtgcggagtctatatggctacgtgtcagatttttgtgtg 49811578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 7e-24; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 43490219 - 43490121
Alignment:
Q  4 aaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttatgta 103  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||          |||||||||||||||||||  ||||||||||||||||||||    
T  43490219 aaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgt----------gggtgtcaaggggtgtattgtcacctaagggtgtttatgta 43490130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 45097734 - 45097836
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||||| |          |||||||||||| |||||| |||||||||| |||||||    
T  45097734 gagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtat----------gggtgtcaagggatgtattgccacctaaggatgtttat 45097823  T
Q  101 gtatcataactct 113  Q
    |||||||||||||    
T  45097824 gtatcataactct 45097836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 13365454 - 13365350
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagg--gtgttt 98  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||          |||||||||||||| |||| ||| ||||||  ||||||    
T  13365454 gagaaagtgtacttgtgcggggtccatatggtcacatgtcagatttttgtgt----------gggtgtcaaggggtatattgccatctaagggtgtgttt 13365365  T
Q  99 atgtatcataactct 113  Q
    |||||||||||||||    
T  13365364 atgtatcataactct 13365350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 38732455 - 38732354
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||||||||||||||||||||||  ||| ||||||||||||||||          |||||||||||| ||||||  ||| |||||||||||||    
T  38732455 gagaaagtgtacttgtgcggggtccatatgaccacatgtcagatttttgtgt----------gggtgtcaagggatgtattgtcacataagggtgtttat 38732366  T
Q  101 gtatcataactc 112  Q
    ||||||||||||    
T  38732365 gtatcataactc 38732354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 40613901 - 40614002
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| |||||||||||||||| ||| ||||||||||||||||||||          ||||||||| ||||||||| |||||||||| ||| |||    
T  40613901 gagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttgtgt----------gggtgtcaaagggtgtattgccacctaaggatgtctat 40613990  T
Q  101 gtatcataactc 112  Q
    ||||||||||||    
T  40613991 gtatcataactc 40614002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 2997486 - 2997569
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggt 94  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||          ||||||||||||||||||| ||||||||||||    
T  2997486 gagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgt----------gggtgtcaaggggtgtattgccacctaagggt 2997569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 9058581 - 9058479
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| ||||||||||||||| |||   ||||||||||||||||||||          |||||||| ||||||||| |||||||||||||| |||    
T  9058581 gagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtg----------ggtgtcaaagggtgtattgccacctaagggtgtctat 9058492  T
Q  101 gtatcataactct 113  Q
    ||||||| |||||    
T  9058491 gtatcattactct 9058479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 42257294 - 42257237
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| |||||||||||||||| ||| |||||||||||||||| |||| ||||    
T  42257294 gagaaagtgtgcttgtgcggggtccatgtggccacgtgtcagatttttatgtgggtgt 42257237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 3034982 - 3035033
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgt 52  Q
    |||||||| |||||||||||||||||||||  ||| ||||||||||||||||    
T  3034982 gagaaagtatacttgtgcggggtccatatgaccacatgtcagatttttgtgt 3035033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 28863556 - 28863460
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| |||||||||||||||  ||   ||||||||||||||||||||          |||||||| ||||||||| |||||||||||||| |||    
T  28863556 gagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtg----------ggtgtcaaagggtgtattgccacctaagggtgtctat 28863467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 26891555 - 26891605
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactct 113  Q
    ||||||| ||||||||||| |||||||||||||  ||||||||||||||||    
T  26891555 gggtgtctaggggtgtattgccacctaagggtggctatgtatcataactct 26891605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 33436151 - 33436201
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactct 113  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||| |||||    
T  33436151 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 33436201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 38273141 - 38273198
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| || ||||||||||||| |||  |||||||||||||||||||| ||||    
T  38273141 gagaaagtgtgctagtgcggggtccatgtggctacgtgtcagatttttgtgtgggtgt 38273198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 36168937 - 36168885
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtg 53  Q
    |||||||| | |||||||||||||||| ||| ||||||||| |||||||||||    
T  36168937 gagaaagtatgcttgtgcggggtccatgtggccacgtgtcaaatttttgtgtg 36168885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 19930819 - 19930915
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    ||||||||||  |||||||||||||| |||   ||||||||||||||||||||          | |||||| ||||||||| |||||||||||||| |||    
T  19930819 gagaaagtgtgtttgtgcggggtccacatgactacgtgtcagatttttgtgtg----------gatgtcaaagggtgtattgccacctaagggtgtctat 19930908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 30915508 - 30915462
Alignment:
Q  67 gtcaaggggtgtatttccacctaagggtgtttatgtatcataactct 113  Q
    ||||| ||||||||| |||||||||||||| |||||||||| |||||    
T  30915508 gtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 30915462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 2533221 - 2533172
Alignment:
Q  4 aaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtg 53  Q
    ||||||| ||||||||||||| || |||  ||||||||||||||||||||    
T  2533221 aaagtgtgcttgtgcggggtctatgtggctacgtgtcagatttttgtgtg 2533172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 10249381 - 10249438
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| |||||||||||||||  ||   |||||||||||||||||||| ||||    
T  10249381 gagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 10249438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 13438444 - 13438387
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| |||||||||||||||  ||   |||||||||||||||||||| ||||    
T  13438444 gagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtgggtgt 13438387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 17820055 - 17820104
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    ||||||||||||||||||| |||||||  | ||| |||||||||||||||    
T  17820055 gggtgtcaaggggtgtattgccacctatagttgtctatgtatcataactc 17820104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 28381654 - 28381711
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| ||||||||| |||||| ||   |||||||||||||||||||| ||||    
T  28381654 gagaaagtgtgcttgtgcggagtccatgtgactacgtgtcagatttttgtgtgggtgt 28381711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 33436312 - 33436255
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| |||||||   ||||| ||||||||||||||||||||| |||| ||||    
T  33436312 gagaaagtgtgcttgtgcaaagtccacatggtcacgtgtcagatttttatgtgggtgt 33436255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 40701527 - 40701478
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    |||||||||  |||||||| |||||||||||||| |||||||||| ||||    
T  40701527 gggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactc 40701478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 4e-22; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 269 - 382
Target Start/End: Complemental strand, 990540 - 990429
Alignment:
Q  269 tttagcttcaactacaaaattgaataacgcgcaactacttgaagtttcttagctatttggagtttctttaccacttctcttgatgatcttgataggactt 368  Q
    |||||||||||||| |||| ||||||  || ||| |||||||| ||||| | |||| |||||||||||||| ||||||||||||||||||||||||||||    
T  990540 tttagcttcaactataaaactgaata--gcacaagtacttgaaatttctgacctatatggagtttctttactacttctcttgatgatcttgataggactt 990443  T
Q  369 aatcttcttgatac 382  Q
     |  ||||||||||    
T  990442 gactttcttgatac 990429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 269 - 402
Target Start/End: Complemental strand, 1028524 - 1028393
Alignment:
Q  269 tttagcttcaactacaaaattgaataacgcgcaactacttgaagtttcttagctatttggagtttctttaccacttctcttgatgatcttgataggactt 368  Q
    |||||||||||||| |||| ||| ||  ||  ||||||||||| ||||||| ||||||||||||| ||||| |||| | ||||||||||||| |||||||    
T  1028524 tttagcttcaactataaaactgatta--gcaaaactacttgaaatttcttacctatttggagtttatttacgacttttattgatgatcttgaaaggactt 1028427  T
Q  369 aatcttcttgatacggacttgctatggataataa 402  Q
    ||| ||||||  || ||||||||| |||||||||    
T  1028426 aattttcttgtaaccgacttgctaaggataataa 1028393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 45058552 - 45058652
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||| |||          ||||||||| ||||||||| ||||||||||||||||||    
T  45058552 gagaaagtatacttgtgcggggtccatatggtcacatgtcagatttttatgt----------gggtgtcaa-gggtgtattgccacctaagggtgtttat 45058640  T
Q  101 gtatcataactc 112  Q
    ||||||||||||    
T  45058641 gtatcataactc 45058652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 269 - 366
Target Start/End: Complemental strand, 1023596 - 1023501
Alignment:
Q  269 tttagcttcaactacaaaattgaataacgcgcaactacttgaagtttcttagctatttggagtttctttaccacttctcttgatgatcttgataggac 366  Q
    |||||||||||||| |||  ||||||  || |||||| ||| | ||||| | ||||||||||||||||||| ||||||||||||||||||||||||||    
T  1023596 tttagcttcaactataaagctgaata--gcacaactatttgtaatttctaacctatttggagtttctttacgacttctcttgatgatcttgataggac 1023501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 36331328 - 36331385
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||    
T  36331328 gagaaagtgtacttgtgcggggtccatatggccacatgtcagatttttgtgtgggtgt 36331385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 321 - 366
Target Start/End: Complemental strand, 1008518 - 1008473
Alignment:
Q  321 ctatttggagtttctttaccacttctcttgatgatcttgataggac 366  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||    
T  1008518 ctatttggagtttctttacgacttctcttgatgatcttgataggac 1008473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 183 - 262
Target Start/End: Complemental strand, 1028628 - 1028549
Alignment:
Q  183 acacttgcttcctaaccttcatgtgcagcaaaataatgatttttgaatcatgctttgacattaaaacatggcttgggtat 262  Q
    ||||||||||||||||  |||||||||||||| ||| || |||| ||| | |||| |||||||||||||||||||| |||    
T  1028628 acacttgcttcctaactctcatgtgcagcaaagtaacgaattttaaattacgcttcgacattaaaacatggcttggatat 1028549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 11907472 - 11907415
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||| ||| |||||||||||||||||||  ||| ||||||||||||||||||||||    
T  11907472 gagaaaatgtgcttgtgcggggtccatatgaccacatgtcagatttttgtgtgagtgt 11907415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 20764914 - 20764971
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| ||||| |||||||||| ||| ||||||||||||||||||||| ||||    
T  20764914 gagaaagtgtgcttgtacggggtccatgtggccacgtgtcagatttttgtgtgggtgt 20764971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 27714890 - 27714992
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| ||||||||||||||| |||   |||||||||||||||||||          ||||||||| ||||||||| |||||||| ||||| |||    
T  27714890 gagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgt----------gggtgtcaaagggtgtattaccacctaaaggtgtctat 27714979  T
Q  101 gtatcataactct 113  Q
    ||||||| |||||    
T  27714980 gtatcattactct 27714992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 51419359 - 51419416
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| ||||||||||||| || ||| ||||||||||||||||||||| ||||    
T  51419359 gagaaagtgtgcttgtgcggggtctatgtggccacgtgtcagatttttgtgtgggtgt 51419416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 26141531 - 26141632
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| |||||| ||||||||| ||  ||||||||||||||||||||          |||||| || ||||||||| |||||||||| ||| |||    
T  26141531 gagaaagtgtgcttgtgtggggtccatgtgaccacgtgtcagatttttgtgt----------gggtgttaaagggtgtattgccacctaaggatgtctat 26141620  T
Q  101 gtatcataactc 112  Q
    ||||||||||||    
T  26141621 gtatcataactc 26141632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 47531966 - 47531914
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtg 53  Q
    |||||||||| |||||||||||| ||||||| ||||||||||||| |||||||    
T  47531966 gagaaagtgtgcttgtgcggggttcatatggccacgtgtcagattcttgtgtg 47531914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 53982112 - 53982011
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| |||||||||||||||  ||   ||||||||||||||||||||          |||||||| ||||||||| |||||||||||||| |||    
T  53982112 gagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgtg----------ggtgtcaaagggtgtattgccacctaagggtgtctat 53982023  T
Q  101 gtatcataactc 112  Q
    ||||||| ||||    
T  53982022 gtatcattactc 53982011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 113
Target Start/End: Original strand, 36331432 - 36331479
Alignment:
Q  66 tgtcaaggggtgtatttccacctaagggtgtttatgtatcataactct 113  Q
    |||||||||||| ||| ||| |||||||||||||||||||||||||||    
T  36331432 tgtcaaggggtgcattgccatctaagggtgtttatgtatcataactct 36331479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 11095404 - 11095454
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactct 113  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||| |||||    
T  11095404 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 11095454  T

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Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 33118902 - 33118952
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactct 113  Q
    ||||||||| |||||||||  ||||||||||||| ||||||||||||||||    
T  33118902 gggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcataactct 33118952  T

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Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 109
Target Start/End: Complemental strand, 42823160 - 42823114
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataa 109  Q
    ||||||||||||||||||| |||| ||| ||||||||||||||||||    
T  42823160 gggtgtcaaggggtgtattaccacataatggtgtttatgtatcataa 42823114  T

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Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 49607463 - 49607413
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactct 113  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||| |||||    
T  49607463 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 49607413  T

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Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 8076442 - 8076393
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    ||||||||| ||||||| | ||||||||||||||||||||||||| ||||    
T  8076442 gggtgtcaaagggtgtactgccacctaagggtgtttatgtatcattactc 8076393  T

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Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 14623890 - 14623939
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactc 112  Q
    ||||||||||||||||||| |||||||||| ||| |||||||||| ||||    
T  14623890 gggtgtcaaggggtgtattgccacctaaggatgtctatgtatcattactc 14623939  T

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Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31456790 - 31456733
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| ||||||||||||||| |||   |||||||||||||||||||| ||||    
T  31456790 gagaaagtgtgcttgtgcggggtccacatgactacgtgtcagatttttgtgtgggtgt 31456733  T

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Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 41189763 - 41189820
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgt 58  Q
    |||||||||| |||||||||||||||| ||| ||||||||| |||||| |||| ||||    
T  41189763 gagaaagtgtgcttgtgcggggtccatgtggccacgtgtcaaatttttatgtgggtgt 41189820  T

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Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 108
Target Start/End: Complemental strand, 52629349 - 52629304
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcata 108  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||||    
T  52629349 gggtgtcaaagggtgtattgccacctaagggtgtctatgtatcata 52629304  T

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Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 11347921 - 11347973
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtg 53  Q
    |||||||||| ||| ||| |||||||| ||| |||||||||||||||||||||    
T  11347921 gagaaagtgtgcttatgcagggtccatgtggccacgtgtcagatttttgtgtg 11347973  T

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Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 13898106 - 13898150
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcat 107  Q
    ||||||||||||||||||| |||||||||| ||||||| ||||||    
T  13898106 gggtgtcaaggggtgtattgccacctaaggatgtttatctatcat 13898150  T

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Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 33644301 - 33644200
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgtttat 100  Q
    |||||||||| |||||||||||||||  ||   |||||||||||||||||||          ||||||||| ||||||||| ||||| |||||||| |||    
T  33644301 gagaaagtgtgcttgtgcggggtccacgtgactacgtgtcagatttttgtgt----------gggtgtcaaagggtgtattgccacccaagggtgtctat 33644212  T
Q  101 gtatcataactc 112  Q
    ||||||| ||||    
T  33644211 gtatcattactc 33644200  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 113
Target Start/End: Original strand, 54868946 - 54868996
Alignment:
Q  63 gggtgtcaaggggtgtatttccacctaagggtgtttatgtatcataactct 113  Q
    |||||||||  |||||||| |||||||||||||| |||||||||| |||||    
T  54868946 gggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactct 54868996  T

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Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 152599 - 152511
Alignment:
Q  1 gagaaagtgtacttgtgcggggtccatatggtcacgtgtcagatttttgtgtgagtgtattggggtgtcaaggggtgtatttccacctaagggtgttta 99  Q
    ||||||||||| ||||||||| ||||||||  ||| ||||||||||||||||          ||||||||||||||||||| ||||| |||||||||||    
T  152599 gagaaagtgtatttgtgcgggatccatatgaccacatgtcagatttttgtgt----------gggtgtcaaggggtgtattgccacccaagggtgttta 152511  T

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