View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_low_20 (Length: 433)
Name: NF18291_low_20
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_low_20 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 7 - 433
Target Start/End: Complemental strand, 41411012 - 41410558
Alignment:
| Q |
7 |
gtgagatgaagcttgagtaaacagaaattctggtcctagatttatgacgcattgtcattatagttccccaatgtattaaagttacaaaacatccccgagt |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41411012 |
gtgacatgaagcttgagtaaacagaaattctggtcctagatttataacgcattgtcattatagttccccaatgtattaaagttacaaaacatccccgagt |
41410913 |
T |
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| Q |
107 |
gtgtcttttgttagtagttttattgac---------taacaaaagacaaattcaaaaccaactaactaacaaaagacacattcgagagcaaagtaactaa |
197 |
Q |
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| T |
41410912 |
gtgtcttttgttagtagttttattgaccatattgactaacaaaagacaaattcaaaaccaactaactaacgaaagacacattcgagagcaaagtaactaa |
41410813 |
T |
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| Q |
198 |
ggaaaaacacggcagtgatgttttgtaactttgatgcattcggagattatagtgacggtgtctaacacctttcaatagccaaaatgactgtttactccaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41410812 |
ggaaaaacacggcagtgatgttttgtaactttgatgcattcggagattatagtgacggtgtctaacacctttcaatagccaaaatgactgtttactccaa |
41410713 |
T |
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| Q |
298 |
tgaagctagctatgatgtgtaattcacattccaatagtgtggtaatgagagagt-------------------aagaacgtaaacatcaattaaacaatt |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |
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| T |
41410712 |
tgaagctagctatgatgtgtaattcacattccaatagtgtggtaatgagagagtaagattgtaatgttagaataagaatgtaaacatgaattaaacaatt |
41410613 |
T |
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| Q |
379 |
catatttgaatcaaatgagtaaagagctgtgtgagaaaaatacttacacacttcc |
433 |
Q |
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| T |
41410612 |
catatttgaatcaaatgagtaaagagctgtgtgagaaaaatacttacacacttcc |
41410558 |
T |
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