View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_low_21 (Length: 414)
Name: NF18291_low_21
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 41855956 - 41856268
Alignment:
| Q |
16 |
acatttatagttgtaatttctttatgcgataaagaatgacttgtttgatcggcgtaaacttagctccttagtttatataggaacattgcataatatattg |
115 |
Q |
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| T |
41855956 |
acatttatagttgtaatttctttatgctataaaaaatgacttgtttgatccgcgtaaacttagctgcttagtttatatagaaacattgcataatatattg |
41856055 |
T |
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| Q |
116 |
caaaagcatcttaa-ttaaaacaaaccaatcacaatttgcaatttgtcaaatacaaggaagtgttagcagcggaaaaaatggaagtcatgaaataaacct |
214 |
Q |
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| T |
41856056 |
caaaagcatcttaaattaaaacaaaccaatcacaatttgcaatttgtcgaatacaaggaagtgttagcagcggaaaaaatggaagtcacgaaataaacct |
41856155 |
T |
|
| Q |
215 |
ccaatcaaaacaagtcagctattgtcatggtgcattggt-----------ttgnnnnnnntaccatttttctacttagagttgttgtacccgtgcaaaat |
303 |
Q |
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| T |
41856156 |
ccaatcaaaacaattcagctattgtcatggtgcattggtttgaaaaacccttgccagaaataccatttttctacttagagttgttgtacccgtgcaaaat |
41856255 |
T |
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| Q |
304 |
aatgtgcactaaa |
316 |
Q |
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| T |
41856256 |
aatgtgcactaaa |
41856268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 308 - 399
Target Start/End: Original strand, 41858725 - 41858816
Alignment:
| Q |
308 |
tgcactaaactagtataaaaattcttgtgctgccaaatggggaaattgctttcggcgtttctcatggattcatacaaacttgatttaaatat |
399 |
Q |
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| T |
41858725 |
tgcactaaactagtataaaaattcttgtgctgccaaatggggaaattgccttcggcgtttctcatggattcatgcaaacttgatttaaatat |
41858816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 246
Target Start/End: Complemental strand, 9760659 - 9760547
Alignment:
| Q |
132 |
aaaacaaaccaatcacaatttgcaatttgtcaaa-tacaaggaagtgttagcagcggaaaaaatggaagtcatgaaataaacctccaatcaaaacaagtc |
230 |
Q |
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||||| ||||||||||||||||| |||| |||| |||||||| ||||| | |||||||| ||||||| |||||||||||| ||| ||||| |||| |
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| T |
9760659 |
aaaactaaccaatcacaatttgctgtttggcaaaatacaaggaggtgtttac---ggaaaaaacagaagtcaagaaataaacctcaaattaaaactagtc |
9760563 |
T |
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| Q |
231 |
agctattgtcatggtg |
246 |
Q |
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| T |
9760562 |
cgctattgtcgtggtg |
9760547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 41488039 - 41488003
Alignment:
| Q |
204 |
gaaataaacctccaatcaaaacaagtcagctattgtc |
240 |
Q |
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| T |
41488039 |
gaaataaacctccaatcaaaactaatcagctattgtc |
41488003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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