View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18291_low_22 (Length: 397)

Name: NF18291_low_22
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18291_low_22
NF18291_low_22
[»] chr6 (5 HSPs)
chr6 (42-140)||(32672339-32672437)
chr6 (294-391)||(32671095-32671190)
chr6 (172-225)||(32672244-32672297)
chr6 (240-296)||(32672164-32672219)
chr6 (252-296)||(32670976-32671020)


Alignment Details
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 42 - 140
Target Start/End: Complemental strand, 32672437 - 32672339
Alignment:
Q  42 aaaaaagtattaaggtagacaaacataattaattacgctttttataaaaatctctaaaaaataattcataaatgattgaatgttaagataactttttta 140  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32672437 aaaaaagtattatggtagacaaacataattaattacgctttttataaaaatctctaaaaaataattcataaatgattgaatgttaagataactttttta 32672339  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 294 - 391
Target Start/End: Original strand, 32671095 - 32671190
Alignment:
Q  294 tttcttaggcgtgcttgtttggatgtgtttgtttccttttccatgcaaacaatatttctcacataatatatgctaaagcatgcataataactctctgc 391  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||  ||||||||||||||||||||    
T  32671095 tttcttaggcgtgcttgtttggatgtgtttgtttccttttccatgcaaacaatatttctcacata--atatgctaagccatgcataataactctctgc 32671190  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 32672297 - 32672244
Alignment:
Q  172 tcttaatacttttgacaataaatagttcattatcattccatccccttacatgag 225  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  32672297 tcttaatacttttgacaataaatagttcatgatcattccatccccttacatgag 32672244  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 32672219 - 32672164
Alignment:
Q  240 agtaaatccccttacatgagttgtgaagagtaactaaaatattgatcatctatgttt 296  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32672219 agtaaatccccttacatgagttgtgaagagtaact-aaatattgatcatctatgttt 32672164  T

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Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 32670976 - 32671020
Alignment:
Q  252 tacatgagttgtgaagagtaactaaaatattgatcatctatgttt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32670976 tacatgagttgtgaagagtaactaaaatattgatcatctatgttt 32671020  T

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