View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_low_25 (Length: 380)
Name: NF18291_low_25
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 13 - 361
Target Start/End: Original strand, 23892921 - 23893270
Alignment:
| Q |
13 |
aatatcatgattgactttgattcaagaaagagctgcacacttcttcaattcatnnnnnnnnnnnnnnnn---gttctgccaccgcaatttgtttcgcgac |
109 |
Q |
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| T |
23892921 |
aatatcatgattgactttgattcaagaaagagctgcacacttcttcaattcataaaaaaaaaaaaaaaaaaagttctgccaccgcgatttgtttcgcgac |
23893020 |
T |
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| Q |
110 |
atcaagattttctatgaccatgatcaatgctgcatcaatgtcttctgaacatannnnnnnnngcaatatcaatgatcgcggtctaggatcaaaacctcgc |
209 |
Q |
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| T |
23893021 |
atcaagattttctatgaccatgatcaatgctgcatcaatgtcttctgaacgtattttttt--gcaatatcaatgatcgcggtctaggatcaaaacctcgc |
23893118 |
T |
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| Q |
210 |
tcgcaaatttcaattggttccaaagttgttaaattgagtctgctaattctcaaaactagcacaaaatttgcatagcaaaataccatttccacaacatata |
309 |
Q |
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| T |
23893119 |
ttgcaaatttcaattggttccaaagttgttaaattgagtctgctaattctcaaaactagcacaaaatttgcatagcaaaataccatttccacaacatata |
23893218 |
T |
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| Q |
310 |
tgtattatatattgcaaacattgttccgagtaggtagctcagttggcgacct |
361 |
Q |
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| T |
23893219 |
tgtatcatatattgcaaacattgttccgagtaggtagctcagttggtgacct |
23893270 |
T |
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