View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_low_26 (Length: 364)
Name: NF18291_low_26
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 36216817 - 36217175
Alignment:
| Q |
1 |
cataggcagcttgtgcatttgtgcaactgaacaaactttttgcaacttcccaaattattcccaacgcttccatggttttatatactttgattctcaaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36216817 |
cataggcagcttgtgcatttgtgcaactgaacaaactttttgcaacttcccaaattattcccaacgcttccatggttttatatactttgattctcaaaa- |
36216915 |
T |
|
| Q |
101 |
tattaatcaaggcttgtaagaaagaaaaacaaatctcacagttagactttcgtttttacttattgctcataaatattttttaacaataaaaatgggattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36216916 |
tattaatcaaggcttgtaagaaagaaaaacaaatctcacagttagactttcgtttttacttattgctcataaatattttttaacaataaaaatgggattt |
36217015 |
T |
|
| Q |
201 |
aaacgtatactagttcttacctctgattataatatgcctttagtaatcttgtgtgattattaattcgacatagaacatagcttaatgattcttttccaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36217016 |
aaacgtatactagttcttacctctgattataatatgcctttagtaatcttgtgtgattattaattcgacatagaacatagcttaatgattcttttccaaa |
36217115 |
T |
|
| Q |
301 |
gttttgaaagaaagaatattgctcatgtgtgtcttctacttcacaaagggtttggttttg |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36217116 |
gttttgaaagaaagaatattgctcatgtgtgtcttctacttcacaaagggtttggttttg |
36217175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 277 - 359
Target Start/End: Original strand, 36234961 - 36235039
Alignment:
| Q |
277 |
atagcttaatgattcttttccaaagttttgaaagaaagaatattgctcatgtgtgtcttctacttcacaaagggtttggtttt |
359 |
Q |
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| T |
36234961 |
atagcttaatgattcttttccaaagttttgaaa----gaatatttctcatgcgtgtcttctacttcacaaagggtttggtttt |
36235039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 36234753 - 36234833
Alignment:
| Q |
1 |
cataggcagcttgtgcatttgtgcaactgaacaaactttttgcaacttcccaaattattcccaacgcttccatggttttat |
81 |
Q |
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||||| ||||||||||||| | ||| | |||||||||||| |||||||||||||||| |||||||||||||||| |||||| |
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| T |
36234753 |
catagacagcttgtgcattagcgcacccgaacaaacttttcgcaacttcccaaattactcccaacgcttccatgattttat |
36234833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 35900775 - 35900735
Alignment:
| Q |
270 |
atagaacatagcttaatgattcttttccaaagttttgaaag |
310 |
Q |
| |
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| T |
35900775 |
atagaacattgcttaatgattcttttccaaagttttgaaag |
35900735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 36234847 - 36234902
Alignment:
| Q |
169 |
ataaatattttttaacaataaaaatgggatttaaacgtatactagttcttacctct |
224 |
Q |
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|||||||||||| |||||||||||| |||||||||| ||||| |||| |||||||| |
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| T |
36234847 |
ataaatatttttgaacaataaaaataggatttaaacatatacaagtttttacctct |
36234902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 2 - 359
Target Start/End: Complemental strand, 25467195 - 25466826
Alignment:
| Q |
2 |
ataggcagcttgtgcatttgtgcaactgaacaaactttttgcaacttcccaaattattcccaacgcttccatggttttatatactttgattctcaaaaat |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
25467195 |
ataggcagcttgtgcatttgtgcaactgaacaaacattttgcaacttcccaaattactcccaacgcttccattgttttatatactttgattctc-aaaat |
25467097 |
T |
|
| Q |
102 |
attaatcaaggcttgtaagaaagaaaaacaaatctcacagttagactttcgtttttacttattgct----cataaatattttttaacaataaaaatggga |
197 |
Q |
| |
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|||||||||| |||| | ||| |||| |||| | ||||||||||||| | |||| || || || ||||||||||||| |||||| ||||||| | |
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| T |
25467096 |
attaatcaagacttgcatgaa--aaaacaaaatattacagttagacttt-atatttattttttactcgtacataaatatttttgaacaatgaaaatggta |
25467000 |
T |
|
| Q |
198 |
tttaaacgtatactagttcttacctctgattataatatgcctttagtaatcttgtgtgatta-ttaattcga----------------catagaacatag |
280 |
Q |
| |
|
||||||| |||| ||||||||||||||||| ||| |||| |||||||||| ||||||||||| ||||||||| ||||||||||| |
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| T |
25466999 |
tttaaacatatattagttcttacctctgatgatactatg-ctttagtaatgttgtgtgattatttaattcgaagcctacgacaacatttatagaacatag |
25466901 |
T |
|
| Q |
281 |
cttaatgattcttttccaaagttttgaaagaaagaatattgctcatgtgtgtcttctacttcacaaagggtttggtttt |
359 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25466900 |
cttaatgattcttttccaaagtttt----gaaagaatattgctcatgcgtgtcttctacttcacaaagggtttggtttt |
25466826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 9770462 - 9770721
Alignment:
| Q |
1 |
cataggcagcttgtgcatttgtgcaactgaacaaactttttgcaacttcccaaattattcccaacgcttccatggttttatatactttgattctcaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||| |||||||| |||| |
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| T |
9770462 |
cataggcagcttgtgcatttgtgcaactcaacaaacttttcgcaacttcccaaattactcccaacgcttcca---------------tgattctc-aaaa |
9770545 |
T |
|
| Q |
101 |
tattaatcaaggcttgtaagaaagaaaaacaaatctcacagttagactttcgtttttacttattgctc----ataaatattttttaacaataaaaa---- |
192 |
Q |
| |
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||||||| |||||||| ||||| |||| | ||||||| |||||||||| ||||| ||||||||| |||||||||||| ||||| ||||| |
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| T |
9770546 |
tattaattaaggcttgcaagaa--aaaataatatctcacggttagactttacattttatttattgctcatatataaatatttttgaacaaaaaaaaaaaa |
9770643 |
T |
|
| Q |
193 |
-tgggatttaaacgtatactagttcttacctctgattataatatgcctttagtaatcttgtgtgattattaattcgac |
269 |
Q |
| |
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||||||||||| || |||||| |||||||||||| ||||||||| |||||||||||| |||||||||| ||||||| |
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| T |
9770644 |
cagggatttaaacatacactagtccttacctctgatgataatatgcgtttagtaatcttctgtgattattgattcgac |
9770721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 309
Target Start/End: Original strand, 9770739 - 9770777
Alignment:
| Q |
271 |
tagaacatagcttaatgattcttttccaaagttttgaaa |
309 |
Q |
| |
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|||| || ||||||||||||||||||||||||||||||| |
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| T |
9770739 |
tagagcacagcttaatgattcttttccaaagttttgaaa |
9770777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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