View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_low_28 (Length: 347)
Name: NF18291_low_28
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 7e-74; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 28 - 168
Target Start/End: Complemental strand, 131357 - 131217
Alignment:
| Q |
28 |
caggctcctcaagccatattccttacatggcaacaccgccggcagtcccgttatataatcaggttccttcctactacccacagcaacaaccacactctaa |
127 |
Q |
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| T |
131357 |
caggctcctcaagccatattccttacatggcaacaccgccggcagtcccgttatataatcaggttccttcctactacccacagcaacaaccacactctaa |
131258 |
T |
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| Q |
128 |
ttatcacaatccagcaatacctgctgctgctgcttctgctt |
168 |
Q |
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| T |
131257 |
ttatcacaatccagcaatacctgctgctgctgcttctgctt |
131217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 236 - 344
Target Start/End: Complemental strand, 131149 - 131041
Alignment:
| Q |
236 |
gccataccctcctccccactcttatcctccatcttcagcctatccaccgccttcataccctccacctccaggttatcctccaaacgctggtaagtaattc |
335 |
Q |
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| T |
131149 |
gccataccctcctccccactcttatcctccatcttcagcctatccaccgccttcataccctccacctacaggttatcctccaaacgctggtaagtaattc |
131050 |
T |
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| Q |
336 |
ttctctctc |
344 |
Q |
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| T |
131049 |
ttgtctctc |
131041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 240 - 337
Target Start/End: Original strand, 161903 - 162000
Alignment:
| Q |
240 |
taccctcctccccactcttatcctccatcttcagcctatccaccgccttcataccctccacctccaggttatcctccaaacgctggtaagtaattctt |
337 |
Q |
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| T |
161903 |
taccctcctccccactcttatccgccatcttcagcttatccaccaccatcataccctccacctgcaggttatcctccaaacactggtaagtaattctt |
162000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 161587 - 161720
Alignment:
| Q |
20 |
gcagaaaccaggctcctcaagccatattccttacatggcaa---caccgccggcagtcccgttatataatcaggttccttcctactacccacagcaacaa |
116 |
Q |
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| T |
161587 |
gcagaaaccaggctcctcaagccatactccctatacagcaatgccaacgccggcagtcccatcatataatcacgttccttcctactaccca---caacaa |
161683 |
T |
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| Q |
117 |
ccacactctaattatcacaatccagcaatacctgctg |
153 |
Q |
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| T |
161684 |
ccacactctaattatcaccatccaacaacacctgctg |
161720 |
T |
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