View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18291_low_29 (Length: 336)
Name: NF18291_low_29
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_low_29 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 6 - 320
Target Start/End: Complemental strand, 12909466 - 12909152
Alignment:
| Q |
6 |
agtgataagaaaacattgaagaggtggttttttatcgacaaaagagtagggtgaagtggaaatttgataaaattattagtttcttattaaattgttattg |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12909466 |
agtgacaagaaaacattgaagaggtggttttttatcgacaaaagagtagggtgaagtggaaatttgataaaattattagtttcttattaaattgttattg |
12909367 |
T |
|
| Q |
106 |
cgtctgagttggcttataaaacctggatcctatggacatgaattcaaataatactcctgttctcacggacagtgctccgataacaaattcaaggctgcat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12909366 |
cgtctgagttggcttataaaacctggatcctatggacatgaattcaaatcatactcctgttctcacggacagtgctccgataacaaattcaaggctgcat |
12909267 |
T |
|
| Q |
206 |
tccaatttgttgccttattcccatactggtgcaaccttttcacacggtatgctgttgaatatcccaaggaagaagaccggaattcttgaagatgtttttt |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12909266 |
tccaatttgttgccttattcccatactggtgcaaccttttcacacggtatgctgttgaatatcccaaggaagaagactggaattcttgaagatgtttttt |
12909167 |
T |
|
| Q |
306 |
cttgtggttggttgg |
320 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
12909166 |
cttgtggttggttgg |
12909152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 6 - 320
Target Start/End: Original strand, 13308842 - 13309160
Alignment:
| Q |
6 |
agtgataagaaaacattgaagaggtggttttttatcgacaaaagagtagggtgaagtggaaatttgataaaattattagtttcttattaaattgttattg |
105 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||||| |||||||||||||| |||||||| || |
|
|
| T |
13308842 |
agtgacaagaaaacattgaagaggtggttttttatcgacaaaagaatatggtgaagtcgaaatctgataaaaatattagtttcttatcaaattgtttctg |
13308941 |
T |
|
| Q |
106 |
cgtctgagttggcttataaaacctggatcctatggacatgaattcaaataatactcctgttctcacggacagtgctccgataacaaattcaaggctgcat |
205 |
Q |
| |
|
| || |||||||| ||||||||||||||||||||||||| ||||| ||| ||| ||||||||| | | ||||| ||||||||| |||||||||||| |
|
|
| T |
13308942 |
tgcgtgtgttggcttgctaaacctggatcctatggacatgaatccaaatcatattcc-gttctcacgtatactgctctgataacaaactcaaggctgcat |
13309040 |
T |
|
| Q |
206 |
tccaatttgttgccttattcccatactggtgcaaccttttcacacggtatgctgttgaatatccc----aaggaagaagaccggaa-ttcttgaagatgt |
300 |
Q |
| |
|
| |||||||||||||||||||||||| | |||||||||| | ||||||||||| |||| ||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
13309041 |
ttcaatttgttgccttattcccataccgctgcaacctttccgcacggtatgctaatgaacatcccagggaaggaagaagaccggaattttttgaagatgt |
13309140 |
T |
|
| Q |
301 |
tttttcttgtggttggttgg |
320 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
13309141 |
tttttcttgtggttggttgg |
13309160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University