View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18291_low_31 (Length: 320)

Name: NF18291_low_31
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18291_low_31
NF18291_low_31
[»] chr8 (8 HSPs)
chr8 (130-308)||(27411430-27411605)
chr8 (18-86)||(27412552-27412620)
chr8 (87-138)||(27412457-27412508)
chr8 (257-308)||(7433138-7433189)
chr8 (257-306)||(6447187-6447236)
chr8 (257-306)||(16823199-16823248)
chr8 (258-306)||(15001289-15001337)
chr8 (256-308)||(28439956-28440008)
[»] chr4 (8 HSPs)
chr4 (18-66)||(52429015-52429063)
chr4 (250-308)||(44221438-44221496)
chr4 (257-306)||(43722763-43722812)
chr4 (258-304)||(51465336-51465382)
chr4 (257-306)||(21935010-21935059)
chr4 (257-306)||(40160796-40160845)
chr4 (257-306)||(50380850-50380899)
chr4 (270-310)||(52132312-52132352)
[»] chr5 (1 HSPs)
chr5 (256-306)||(42515804-42515854)
[»] chr7 (3 HSPs)
chr7 (257-306)||(34448624-34448673)
chr7 (257-306)||(19626539-19626588)
chr7 (257-305)||(7388054-7388102)
[»] chr1 (5 HSPs)
chr1 (253-302)||(30003195-30003244)
chr1 (257-303)||(8153133-8153179)
chr1 (257-306)||(11701964-11702013)
chr1 (258-306)||(6000157-6000205)
chr1 (259-307)||(25165105-25165153)
[»] chr6 (3 HSPs)
chr6 (257-308)||(11520588-11520639)
chr6 (257-306)||(1918472-1918521)
chr6 (257-306)||(11456389-11456438)
[»] chr3 (6 HSPs)
chr3 (265-308)||(2153513-2153556)
chr3 (257-308)||(7827506-7827557)
chr3 (257-308)||(7829894-7829945)
chr3 (258-304)||(28093353-28093399)
chr3 (257-306)||(46903906-46903955)
chr3 (262-306)||(7624734-7624778)
[»] scaffold0238 (1 HSPs)
scaffold0238 (258-298)||(4797-4837)
[»] chr2 (3 HSPs)
chr2 (270-306)||(15205551-15205587)
chr2 (257-305)||(24548115-24548163)
chr2 (257-309)||(27412847-27412899)


Alignment Details
Target: chr8 (Bit Score: 116; Significance: 5e-59; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 130 - 308
Target Start/End: Complemental strand, 27411605 - 27411430
Alignment:
Q  130 tgtatattaatcatcgaatagaaataaagtccaaagtaattaaatagttgttgataattgnnnnnnnnnntaatgtgttaaaagatgtttgtttttgtcg 229  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||          |||||||||||| |||||||||||||||||    
T  27411605 tgtatattaatcatcgaatagaaataaagttcaaagtaattaaatagttgtggataattgaaagaaaa--taatgtgttaaa-gatgtttgtttttgtcg 27411509  T
Q  230 cattagtcaacttatatgggtatgttatcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtctg 308  Q
     |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27411508 tattagtcaacttatatgggtatgtcatcgtgagtttaatttagttggtttcgactatgcataatatatgtaaggtctg 27411430  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 27412620 - 27412552
Alignment:
Q  18 tccaccatcctcaacgccatatttcttagtctccacaactcatgttccgaaaaaataatctactgtaat 86  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||| | |||||||||||||| ||||    
T  27412620 tccaccatcatcaacgccatatttcttagtctccgcaactcatgttctggaaaaataatctactctaat 27412552  T

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Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 27412508 - 27412457
Alignment:
Q  87 agtattaccgcagttaatcacagtaaaaaatactgaatgtctttgtatatta 138  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27412508 agtattaccgcagttaatcacagtaaaaaatactcaatgtctttgtatatta 27412457  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 308
Target Start/End: Original strand, 7433138 - 7433189
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtctg 308  Q
    |||||||| ||  ||||||||||| ||| |||||||||||||||||||||||    
T  7433138 tcgtgagtatagctcagttggtttggacaatgcataatatatgtaaggtctg 7433189  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 6447187 - 6447236
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtc 306  Q
    |||||||||||| ||||||||| | ||| |||||||||||||| ||||||    
T  6447187 tcgtgagtttaactcagttggtatggacaatgcataatatatgcaaggtc 6447236  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 16823248 - 16823199
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtc 306  Q
    ||||||| |||| ||||||||| | |||||| ||||||||||||||||||    
T  16823248 tcgtgagcttaactcagttggtatagactatacataatatatgtaaggtc 16823199  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 15001337 - 15001289
Alignment:
Q  258 cgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtc 306  Q
    |||||| |||| ||||||||||||||| |||||||| ||||| ||||||    
T  15001337 cgtgagcttaactcagttggtttcgacaatgcataaaatatgcaaggtc 15001289  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 308
Target Start/End: Original strand, 28439956 - 28440008
Alignment:
Q  256 atcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtctg 308  Q
    ||||||||||||||||||||| |   ||  |||||||||||||||||||||||    
T  28439956 atcgtgagtttaattcagttgataaagataatgcataatatatgtaaggtctg 28440008  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 52429015 - 52429063
Alignment:
Q  18 tccaccatcctcaacgccatatttcttagtctccacaactcatgttccg 66  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  52429015 tccaccatcctcaacgccatatttcttagtctccgcaactcatgttccg 52429063  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 308
Target Start/End: Original strand, 44221438 - 44221496
Alignment:
Q  250 tatgttatcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtctg 308  Q
    ||||| |||||||| |||||||||||||| | ||| |||||||||||||| ||||||||    
T  44221438 tatgtcatcgtgagcttaattcagttggtatggacaatgcataatatatgcaaggtctg 44221496  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 43722763 - 43722812
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtc 306  Q
    |||||||||||| ||||||||| | ||| |||||||||||||||||||||    
T  43722763 tcgtgagtttaactcagttggtatggacaatgcataatatatgtaaggtc 43722812  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 304
Target Start/End: Original strand, 51465336 - 51465382
Alignment:
Q  258 cgtgagtttaattcagttggtttcgactatgcataatatatgtaagg 304  Q
    |||||| |||||||||||||| | ||| |||||||||||||||||||    
T  51465336 cgtgagcttaattcagttggtatggacaatgcataatatatgtaagg 51465382  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 21935010 - 21935059
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtc 306  Q
    |||||||||||| ||||||||| | ||| ||||||||| |||||||||||    
T  21935010 tcgtgagtttaactcagttggtatagacaatgcataatgtatgtaaggtc 21935059  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 40160796 - 40160845
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtc 306  Q
    ||||||| |||||||||||||| | ||| | |||||||||||||||||||    
T  40160796 tcgtgagcttaattcagttggtatagacaacgcataatatatgtaaggtc 40160845  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 50380899 - 50380850
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtc 306  Q
    ||||||| |||||||||||||| |  || |||||||||||||||||||||    
T  50380899 tcgtgagcttaattcagttggtatgaacaatgcataatatatgtaaggtc 50380850  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 310
Target Start/End: Complemental strand, 52132352 - 52132312
Alignment:
Q  270 tcagttggtttcgactatgcataatatatgtaaggtctgtg 310  Q
    ||||||||||| ||| |||||||||||||| ||||||||||    
T  52132352 tcagttggtttggacaatgcataatatatgcaaggtctgtg 52132312  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 306
Target Start/End: Original strand, 42515804 - 42515854
Alignment:
Q  256 atcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtc 306  Q
    |||||||| |||||||||||||| | ||| |||||||||||||||||||||    
T  42515804 atcgtgagcttaattcagttggtatggacaatgcataatatatgtaaggtc 42515854  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 34448673 - 34448624
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtc 306  Q
    ||||||| |||| ||||||||||| ||| |||||||||||||||||||||    
T  34448673 tcgtgagcttaactcagttggtttggacaatgcataatatatgtaaggtc 34448624  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 19626588 - 19626539
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtc 306  Q
    ||||||| |||| ||||||||||| ||| |||||||||||||| ||||||    
T  19626588 tcgtgagcttaactcagttggtttggacaatgcataatatatgcaaggtc 19626539  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 305
Target Start/End: Complemental strand, 7388102 - 7388054
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggt 305  Q
    ||||||| |||| ||||||||||  ||| ||||||||||||||||||||    
T  7388102 tcgtgagcttaactcagttggttgggacaatgcataatatatgtaaggt 7388054  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 30003195 - 30003244
Alignment:
Q  253 gttatcgtgagtttaattcagttggtttcgactatgcataatatatgtaa 302  Q
    ||||||||||| |||||||||||||| | ||| |||||||||||||||||    
T  30003195 gttatcgtgagcttaattcagttggtatggacaatgcataatatatgtaa 30003244  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 303
Target Start/End: Original strand, 8153133 - 8153179
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaag 303  Q
    |||||||||||| ||||||||| | ||| ||||||||||||||||||    
T  8153133 tcgtgagtttaactcagttggtatagacaatgcataatatatgtaag 8153179  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 11701964 - 11702013
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtc 306  Q
    ||||||| |||||||||||||||  ||| |||||||| ||||||||||||    
T  11701964 tcgtgagcttaattcagttggttgggacaatgcataaaatatgtaaggtc 11702013  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 6000205 - 6000157
Alignment:
Q  258 cgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtc 306  Q
    ||||||||||| ||||||||||  ||| |||||||||||||| ||||||    
T  6000205 cgtgagtttaactcagttggttaggacaatgcataatatatgcaaggtc 6000157  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 307
Target Start/End: Complemental strand, 25165153 - 25165105
Alignment:
Q  259 gtgagtttaattcagttggtttcgactatgcataatatatgtaaggtct 307  Q
    |||||||||| ||| ||||| | ||| ||||||||||||||||||||||    
T  25165153 gtgagtttaactcaattggtatggacaatgcataatatatgtaaggtct 25165105  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 308
Target Start/End: Original strand, 11520588 - 11520639
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtctg 308  Q
    ||||||||||| ||||||||||  |||| ||||||||||| |||||||||||    
T  11520588 tcgtgagtttagttcagttggtagcgacaatgcataatatttgtaaggtctg 11520639  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 1918521 - 1918472
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtc 306  Q
    |||||||||||| ||||||||| | ||| |||||||||||||| ||||||    
T  1918521 tcgtgagtttaactcagttggtatagacaatgcataatatatgcaaggtc 1918472  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Complemental strand, 11456438 - 11456389
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtc 306  Q
    ||||||||||||  |||||||| | ||| |||||||||||||||||||||    
T  11456438 tcgtgagtttaaaacagttggtatggacaatgcataatatatgtaaggtc 11456389  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 2153556 - 2153513
Alignment:
Q  265 ttaattcagttggtttcgactatgcataatatatgtaaggtctg 308  Q
    |||||||||||||||| ||| |||||||||||||| ||||||||    
T  2153556 ttaattcagttggtttggacaatgcataatatatgcaaggtctg 2153513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 308
Target Start/End: Original strand, 7827506 - 7827557
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtctg 308  Q
    |||||||||||| ||||||| | | ||| |||||||||||||||||||||||    
T  7827506 tcgtgagtttaactcagttgatatggacaatgcataatatatgtaaggtctg 7827557  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 308
Target Start/End: Original strand, 7829894 - 7829945
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtctg 308  Q
    |||||||||||| ||||||| | | ||| |||||||||||||||||||||||    
T  7829894 tcgtgagtttaactcagttgatatggacaatgcataatatatgtaaggtctg 7829945  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 304
Target Start/End: Original strand, 28093353 - 28093399
Alignment:
Q  258 cgtgagtttaattcagttggtttcgactatgcataatatatgtaagg 304  Q
    ||||||||||||||||||||| | ||| |||||||||||||| ||||    
T  28093353 cgtgagtttaattcagttggtatggacaatgcataatatatgcaagg 28093399  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 306
Target Start/End: Original strand, 46903906 - 46903955
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtc 306  Q
    ||||||| |||| ||||||||| | ||| |||||||||||||||||||||    
T  46903906 tcgtgagattaactcagttggtatggacaatgcataatatatgtaaggtc 46903955  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 306
Target Start/End: Complemental strand, 7624778 - 7624734
Alignment:
Q  262 agtttaattcagttggtttcgactatgcataatatatgtaaggtc 306  Q
    ||||||||||||||| ||| ||| ||||||||||||| |||||||    
T  7624778 agtttaattcagttgatttggacaatgcataatatatataaggtc 7624734  T

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Target: scaffold0238 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 4837 - 4797
Alignment:
Q  258 cgtgagtttaattcagttggtttcgactatgcataatatat 298  Q
    ||||||||||||||||||||| ||||| || ||||||||||    
T  4837 cgtgagtttaattcagttggtatcgacaatacataatatat 4797  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 306
Target Start/End: Complemental strand, 15205587 - 15205551
Alignment:
Q  270 tcagttggtttcgactatgcataatatatgtaaggtc 306  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  15205587 tcagttggtttagacaatgcataatatatgtaaggtc 15205551  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 305
Target Start/End: Original strand, 24548115 - 24548163
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggt 305  Q
    |||||||||||| ||| ||||| | ||| ||||||||||||||||||||    
T  24548115 tcgtgagtttaactcaattggtatagacaatgcataatatatgtaaggt 24548163  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 309
Target Start/End: Complemental strand, 27412899 - 27412847
Alignment:
Q  257 tcgtgagtttaattcagttggtttcgactatgcataatatatgtaaggtctgt 309  Q
    ||||||| |||| |||||||||   ||| ||||||||||||||||||||||||    
T  27412899 tcgtgagcttaactcagttggtagagacaatgcataatatatgtaaggtctgt 27412847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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