View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18291_low_32 (Length: 314)

Name: NF18291_low_32
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18291_low_32
NF18291_low_32
[»] chr1 (9 HSPs)
chr1 (1-300)||(6521636-6521936)
chr1 (104-300)||(6506903-6507099)
chr1 (121-300)||(6517220-6517399)
chr1 (122-300)||(6512822-6513000)
chr1 (96-213)||(47778041-47778158)
chr1 (96-193)||(47788183-47788280)
chr1 (128-300)||(47760133-47760299)
chr1 (100-193)||(47781969-47782062)
chr1 (128-205)||(6523733-6523810)
[»] scaffold0341 (2 HSPs)
scaffold0341 (104-300)||(928-1124)
scaffold0341 (104-300)||(8581-8778)
[»] chr7 (1 HSPs)
chr7 (152-297)||(722161-722305)
[»] chr5 (3 HSPs)
chr5 (179-299)||(28856512-28856632)
chr5 (181-231)||(28831318-28831368)
chr5 (179-299)||(28861789-28861909)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 6521936 - 6521636
Alignment:
Q  1 tgtcccctgatgcagctttatttcttaaactatccnnnnnnnn-ttcaccactttgttaaactcaacctcatttgttgcgttgtttgtattccaaacaaa 99  Q
    ||||||||||||||||| |||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521936 tgtcccctgatgcagctctatttcttaaactatccaaaaaaaaattcaccactttgttaaactcaacctcatttgttgcgttgtttgtattccaaacaaa 6521837  T
Q  100 ataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttt 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521836 ataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttt 6521737  T
Q  200 tgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgt 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521736 tgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgt 6521637  T
Q  300 c 300  Q
    |    
T  6521636 c 6521636  T

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Target: chr1; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 104 - 300
Target Start/End: Original strand, 6506903 - 6507099
Alignment:
Q  104 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgac 203  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| |||||||||||||||||||||||| |||||||    
T  6506903 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgac 6507002  T
Q  204 aatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 300  Q
    || |||||||||||||  |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||    
T  6507003 aaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtc 6507099  T

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Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 121 - 300
Target Start/End: Original strand, 6517220 - 6517399
Alignment:
Q  121 gagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaaga 220  Q
    ||||||||||||||||||| ||||||| ||||||||||||   ||||| | |||||| |||||||||| |||||  ||||||||| ||||||||||||      
T  6517220 gagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaacgttgtgttagaaac 6517319  T
Q  221 acagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 300  Q
    ||||||||||||| ||| |||||| ||||||||||  |||| | ||||||||| ||||||||||| ||||||||||||||    
T  6517320 acagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtc 6517399  T

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Target: chr1; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 122 - 300
Target Start/End: Original strand, 6512822 - 6513000
Alignment:
Q  122 agaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaa 221  Q
    ||||| ||||||||||||| |||||| ||||||||||||   || || |  ||||| ||||| || |||||||| ||||||||| ||||||||||||  |    
T  6512822 agaccgaatattgaacggtatgagtaacgcaacatgcatgtatcttcatcataccaaccaatagcctcttttcgattttgacaaagttgtgttagaaaga 6512921  T
Q  222 cagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 300  Q
    ||| |||||| || | ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  6512922 cagatgaattctttatgcaattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtc 6513000  T

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Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 213
Target Start/End: Complemental strand, 47778158 - 47778041
Alignment:
Q  96 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcg 195  Q
    ||||||| |||||||||||||| ||||| | |||||||||||||| |||||| ||||||||||||| |||||| | |||||| ||||||||||| |||      
T  47778158 caaaatatgcaggtccaatttcattgaggctaaatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttccttttt 47778059  T
Q  196 gttttgacaatgttgtgt 213  Q
    |||| ||||| |||||||    
T  47778058 gtttggacaaagttgtgt 47778041  T

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Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 193
Target Start/End: Complemental strand, 47788280 - 47788183
Alignment:
Q  96 caaaataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctttt 193  Q
    ||||||||||||||||||||||||| ||||| | ||||||||||| ||| || || ||||| ||||  ||||| | ||||||||||||||||||||||    
T  47788280 caaaataagcaggtccaatttcgtttagacccattattgaacggtctgaataacgtaacatacatttctcatcctcgtaccatccaattgcttctttt 47788183  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 128 - 300
Target Start/End: Original strand, 47760133 - 47760299
Alignment:
Q  128 aatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttg 227  Q
    |||||||| ||||||||||| ||||||||||| |  ||||      |||| ||||||||||||||| ||||| ||||| ||| ||| ||||||||  |||    
T  47760133 aatattgatcggtttgagtaacgcaacatgcagttatcat------accaaccaattgcttctttttggtttggacaaagttttgtgagaagaactcttg 47760226  T
Q  228 aatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 300  Q
    |||  ||||| ||| |  | ||| | | | |||| |||||||||||||| |||||||| ||||||||||||||    
T  47760227 aatcgttgagacaactgcggcaaacgtcgggtttaacatctcctctacagagtccaatggcgtttactttgtc 47760299  T

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Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 193
Target Start/End: Complemental strand, 47782062 - 47781969
Alignment:
Q  100 ataagcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttctttt 193  Q
    |||||| || ||||||||||| || || ||||| ||||||| ||| || || ||||||||||  ||||| | ||||||||||||||||||||||    
T  47782062 ataagctggcccaatttcgtttaggcctaatatagaacggtctgaataacgtaacatgcatttctcatcctcgtaccatccaattgcttctttt 47781969  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 205
Target Start/End: Complemental strand, 6523810 - 6523733
Alignment:
Q  128 aatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaa 205  Q
    ||||| ||||||| ||| || ||||||||||||| |||||| |  ||||| ||||||||||||||| ||||| |||||    
T  6523810 aatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctttttggtttggacaa 6523733  T

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Target: scaffold0341 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 104 - 300
Target Start/End: Original strand, 928 - 1124
Alignment:
Q  104 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgac 203  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| |||||||||||||||||||||||| |||||||    
T  928 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgac 1027  T
Q  204 aatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 300  Q
    || |||||||||||||  |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||    
T  1028 aaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtc 1124  T

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Target: scaffold0341; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 104 - 300
Target Start/End: Original strand, 8581 - 8778
Alignment:
Q  104 gcaggtccaatttcgttgagaccaaatattgaacggtttgagtagcgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcgg-ttttga 202  Q
    |||||||| ||||| |||| |||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||||||||||||||||||||  ||||||    
T  8581 gcaggtcccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgtattttga 8680  T
Q  203 caatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtc 300  Q
    ||| |||||||||||||  |||||||||||| |||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||||||||    
T  8681 caaagttgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtc 8778  T

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Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 152 - 297
Target Start/End: Complemental strand, 722305 - 722161
Alignment:
Q  152 aacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaat 251  Q
    |||||||||| |||||| | |||| ||||||||||||||||||||||||   |||||||||||||||| ||| |||||| |||| ||||| |||||||||    
T  722305 aacatgcatttttcatcatcgtacaatccaattgcttcttttcggttttataaatgttgtgttagaaggacaattgaatatttgtggcaa-tttgacaat 722207  T
Q  252 cattgagtttgacatctcctctacatagtccaatcgcgtttacttt 297  Q
    ||||||| || |||||||||||||||||||||| | ||||||||||    
T  722206 cattgagcttaacatctcctctacatagtccaaccacgtttacttt 722161  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 299
Target Start/End: Original strand, 28856512 - 28856632
Alignment:
Q  179 ccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacata 278  Q
    |||||||||||||||  |||| |||||| |||||||||||||||  ||||||| || || ||| |  | ||||||||  | || ||||||||||| ||||    
T  28856512 ccaattgcttcttttttgtttggacaattttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcata 28856611  T
Q  279 gtccaatcgcgtttactttgt 299  Q
     ||| || |||| ||||||||    
T  28856612 atcctatggcgtatactttgt 28856632  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 28831318 - 28831368
Alignment:
Q  181 aattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatt 231  Q
    ||||||||||||| ||||| |||||| |||||||||||||||  |||||||    
T  28831318 aattgcttctttttggtttggacaattttgtgttagaagaactcttgaatt 28831368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 299
Target Start/End: Original strand, 28861789 - 28861909
Alignment:
Q  179 ccaattgcttcttttcggttttgacaatgttgtgttagaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacata 278  Q
    ||||||||||||||| ||||  |||| | |||||||||||||||  ||||||| || || ||| |  | ||||||||  | || ||||||||||| ||||    
T  28861789 ccaattgcttctttttggttaggacatttttgtgttagaagaactcttgaattgttaagacaactgcggcaatcatttggattaacatctcctctgcata 28861888  T
Q  279 gtccaatcgcgtttactttgt 299  Q
     ||| || |||| ||||||||    
T  28861889 atcctatggcgtatactttgt 28861909  T

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