View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_low_34 (Length: 305)
Name: NF18291_low_34
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_low_34 |
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Alignment Details
Target: chr1 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 45864787 - 45864944
Alignment:
| Q |
1 |
aaaaatgcattcaactgtgggcaatttaacattcaattgtgtactatcaaagcacatactgcatttatagttgtgaagtagctatgtgtcaattaatatg |
100 |
Q |
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| T |
45864787 |
aaaaatgcatttaactgtgggcaatttaacattca-ttgtgtactatcaaagcacatactacatttatagttgtgaagtagccatgtgtcaattaatatg |
45864885 |
T |
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| Q |
101 |
taac-nnnnnnntaaaatcaacttgtaacggtggatttgagatgaattaaatgggatca |
158 |
Q |
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| T |
45864886 |
taacaaaaaaaataaaatcaacttgtaacggtggatttgagatgaattaaatgggatca |
45864944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 169 - 287
Target Start/End: Original strand, 45864924 - 45865048
Alignment:
| Q |
169 |
gagaggaattaaatgggatcattgttataaaactaaattcatccaatatttagtttaacaaatga------aatcacacagttcatttcatttcatttcc |
262 |
Q |
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| T |
45864924 |
gagatgaattaaatgggatcattgttataaaactaaattcatccaatatttagtttaacaaatgacggtctaatcacacagttcatttcatttcatttcc |
45865023 |
T |
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| Q |
263 |
tatgctctgaaattctcgagtaaaa |
287 |
Q |
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| T |
45865024 |
tatgctctgaaattctcgagtaaaa |
45865048 |
T |
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