View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18291_low_35 (Length: 296)

Name: NF18291_low_35
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18291_low_35
NF18291_low_35
[»] chr8 (13 HSPs)
chr8 (4-279)||(36184781-36185056)
chr8 (4-279)||(36207965-36208240)
chr8 (4-279)||(36202493-36202768)
chr8 (4-279)||(36201108-36201383)
chr8 (5-279)||(36196941-36197209)
chr8 (4-279)||(36213394-36213675)
chr8 (4-200)||(36199086-36199282)
chr8 (4-272)||(36210052-36210320)
chr8 (203-279)||(36214837-36214913)
chr8 (4-127)||(36188619-36188742)
chr8 (182-279)||(36188749-36188846)
chr8 (180-279)||(36183540-36183639)
chr8 (238-279)||(36199303-36199344)


Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 36184781 - 36185056
Alignment:
Q  4 aggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaagagc 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36184781 aggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaagagc 36184880  T
Q  104 tctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatcttatcatcaaaattgagacctattgcaata 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36184881 tctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatcttatcatcaaaattcagacctattgcaata 36184980  T
Q  204 ccaatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgat 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36184981 ccaatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgat 36185056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 36207965 - 36208240
Alignment:
Q  4 aggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaagagc 103  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  36207965 aggggataccaatctcacctaaatcaagtctaccatgaagatcatacagtacaactagtactgtttgcagtttctttatcttagcacacagaagaagagc 36208064  T
Q  104 tctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatcttatcatcaaaattgagacctattgcaata 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36208065 tctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatcttatcatcaaaattcagacctattgcaata 36208164  T
Q  204 ccaatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgat 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36208165 ccaatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgat 36208240  T

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Target: chr8; HSP #3
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 36202493 - 36202768
Alignment:
Q  4 aggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaagagc 103  Q
    |||| |||||||| |||| |||||||||||||||||| |||||| ||| ||||||||| ||||||||||| ||||| |||||||| ||||| ||||||||    
T  36202493 agggcataccaatttcacttaaatcaagtctaccatggagatcatacattacaactaggactgtttgcagctccttcatcttagcacacagtagaagagc 36202592  T
Q  104 tctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatcttatcatcaaaattgagacctattgcaata 203  Q
    ||||||||||||| | ||||||||||||||||| ||| ||| |||||| |||| ||||| |||||| ||||||||||||||||| |||| |||||||  |    
T  36202593 tctttctgcagttcttattcttttgttattaccgtaagacatgcaacaggatgattcagctagatcaatcttatcatcaaaattcagacatattgcatca 36202692  T
Q  204 ccaatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgat 279  Q
    ||||| |||||||||||||   |||||||||| ||||| ||||| ||||||||||||||||||| |||||||||||    
T  36202693 ccaatttgtgtttgaatctgtgtaatgtctggcttcttcgtcacggttgctgtgacaatcttttcgaacaattgat 36202768  T

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Target: chr8; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 36201108 - 36201383
Alignment:
Q  4 aggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaagagc 103  Q
    |||||| ||||||||| |||||||||| |||||||||||||||| ||| ||||||||| ||||||||||| ||||| |||||||| || | |||| ||||    
T  36201108 aggggacaccaatctcccctaaatcaaatctaccatgaagatcatacagtacaactaggactgtttgcagctccttcatcttagcacaaataagatgagc 36201207  T
Q  104 tctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatcttatcatcaaaattgagacctattgcaata 203  Q
    ||| ||||||||||||||||||||  |||||||| |||||| |||||||| || ||  | |   ||  || |||||| |||||||||||||||||||  |    
T  36201208 tctatctgcagttgtcattcttttactattaccaaaacacatgcaacaagttgattttgctgcctccgtcatatcattaaaattgagacctattgcatca 36201307  T
Q  204 ccaatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgat 279  Q
    ||||||||||||||||||||  |||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  36201308 ccaatctgtgtttgaatcttattaatgtctggcttcttggtcacagttgctgtgacagtcttttggaacaattgat 36201383  T

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Target: chr8; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 5 - 279
Target Start/End: Original strand, 36196941 - 36197209
Alignment:
Q  5 ggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaagagct 104  Q
    |||||||||||||||||||||||| ||||| ||| |||||||| ||| ||||||||| ||||||||||| || || |||||||| |||| |||| |||||    
T  36196941 ggggataccaatctcacctaaatcgagtctcccacgaagatcatacagtacaactaggactgtttgcagctctttcatcttagcacacaaaagatgagct 36197040  T
Q  105 ctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatcttatcatcaaaattgagacctattgcaatac 204  Q
    ||||||||||||| |||||||||  |||||||| || ||| |||||||| || ||||| | ||||  |||||||||||||||      ||||||||  ||    
T  36197041 ctttctgcagttgccattctttttctattaccaaaaaacatgcaacaagttgattcagctggatccgtcttatcatcaaaat------ctattgcatcac 36197134  T
Q  205 caatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgat 279  Q
    ||||  |||||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||| |||||||    
T  36197135 caattagtgtttgaatctttgtaatgtctggcttctttgtcacagttgctgtgacaatcttttggaataattgat 36197209  T

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Target: chr8; HSP #6
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 36213394 - 36213675
Alignment:
Q  4 aggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaagagc 103  Q
    |||||| |||||||||||||||||| ||||| |||||||||||| ||| |||||  || ||||||||||| || || |||||||| || | |||| ||||    
T  36213394 aggggacaccaatctcacctaaatcgagtctcccatgaagatcatacattacaatcaggactgtttgcagctctttcatcttagcacaaataagatgagc 36213493  T
Q  104 tctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatcttatcatcaaaattgagacctattgcaata 203  Q
    ||||||||||||||||| | ||||  |||||||| |||||| |||||||| || ||| | || ||  |||||||||| |||||||||||||||||||  |    
T  36213494 tctttctgcagttgtcactgttttactattaccaaaacacatgcaacaagttgattcggctacattcatcttatcattaaaattgagacctattgcatca 36213593  T
Q  204 ccaatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttg------ctgtgacaatcttttggaacaattgat 279  Q
    ||||| |||||||||||| |  |||||||||| ||||| ||||||||||      |||||||||||||||||||||||||||    
T  36213594 ccaatttgtgtttgaatcattgtaatgtctggcttctttgtcacagttgctgtgactgtgacaatcttttggaacaattgat 36213675  T

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Target: chr8; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 4 - 200
Target Start/End: Original strand, 36199086 - 36199282
Alignment:
Q  4 aggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaagagc 103  Q
    ||||||||||||||| || ||||||||||||||||| ||||||| ||| ||||||||| ||||||||||| || || |||||||| ||||||||||||||    
T  36199086 aggggataccaatcttacttaaatcaagtctaccataaagatcatacactacaactaggactgtttgcagctctttcatcttagcacacagaagaagagc 36199185  T
Q  104 tctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatcttatcatcaaaattgagacctattgca 200  Q
    |||||||| |||||||| |||||| |||||| || |||||| ||||||||  | ||||| || |||  || ||||||||||||| ||||||||||||    
T  36199186 tctttctgtagttgtcaatcttttattattaacaaaacacatgcaacaagtagattcagctatatctgtcgtatcatcaaaattcagacctattgca 36199282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 4 - 272
Target Start/End: Original strand, 36210052 - 36210320
Alignment:
Q  4 aggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaagagc 103  Q
    |||||||||||||||| |||||||  |||| ||||||||||||| ||| |||||  || ||||||||||| || || |||||||| || ||||||  |||    
T  36210052 aggggataccaatctctcctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgcagctctttcatcttagcacaaagaagatcagc 36210151  T
Q  104 tctttctgcagttgtcattcttttgttattaccataacacacgcaacaagatgtttcagatagatcgatcttatcatcaaaattgagacctattgcaata 203  Q
    ||||||||||||| ||||||||||  |||||||| ||| |  ||||| || || | | | || ||   ||||||||| ||||||||||||||||||| |     
T  36210152 tctttctgcagttatcattcttttactattaccaaaacgcgtgcaaccagttgatacggctacatacgtcttatcattaaaattgagacctattgcattg 36210251  T
Q  204 ccaatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttggaac 272  Q
    ||||| | ||||||||||||  |||||||||| ||||| |||||||||| |||||||||||||||||||    
T  36210252 ccaatttctgtttgaatctttgtaatgtctggcttctttgtcacagttgttgtgacaatcttttggaac 36210320  T

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Target: chr8; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 36214837 - 36214913
Alignment:
Q  203 accaatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgat 279  Q
    |||||| ||||||||||||||  |||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  36214837 accaatttgtgtttgaatctttgtaatgtctggcttctttgtcacagttgctgtgacaatcttttggaacaattgat 36214913  T

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Target: chr8; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 127
Target Start/End: Original strand, 36188619 - 36188742
Alignment:
Q  4 aggggataccaatctcacctaaatcaagtctaccatgaagatcacacaatacaactagtactgtttgcagttcctttatcttagcgcacagaagaagagc 103  Q
    |||||||||||||||| |||||||  |||| ||||||||||||| ||| |||||  || ||||||||||| || || |||||||| || ||||||  |||    
T  36188619 aggggataccaatctctcctaaattgagtcgaccatgaagatcatacattacaatcaggactgtttgcagctctttcatcttagcacaaagaagatcagc 36188718  T
Q  104 tctttctgcagttgtcattctttt 127  Q
    ||||||||||||| ||||||||||    
T  36188719 tctttctgcagttatcattctttt 36188742  T

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Target: chr8; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 182 - 279
Target Start/End: Original strand, 36188749 - 36188846
Alignment:
Q  182 aaaattgagacctattgcaataccaatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgat 279  Q
    |||||||||||||||||||   ||||| | ||||||||||||  |||||||||| ||||| || ||||||| ||||||||||||||||||||||||||    
T  36188749 aaaattgagacctattgcatagccaatttctgtttgaatctttgtaatgtctggcttctttgttacagttgttgtgacaatcttttggaacaattgat 36188846  T

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Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 279
Target Start/End: Original strand, 36183540 - 36183639
Alignment:
Q  180 tcaaaattgagacctattgcaataccaatctgtgtttgaatcttgctaatgtctggtttcttggtcacagttgctgtgacaatcttttggaacaattgat 279  Q
    ||||||||||||||||||||||||||||| |||||| ||||||   |||||||  | ||||  ||||||||||||  ||| |||||||||||||||||||    
T  36183540 tcaaaattgagacctattgcaataccaatttgtgttcgaatctatgtaatgtcaagcttctatgtcacagttgctaagacgatcttttggaacaattgat 36183639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 279
Target Start/End: Original strand, 36199303 - 36199344
Alignment:
Q  238 tcttggtcacagttgctgtgacaatcttttggaacaattgat 279  Q
    |||| |||||||||| ||||||||||||||||||||||||||    
T  36199303 tctttgtcacagttgttgtgacaatcttttggaacaattgat 36199344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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