View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18291_low_38 (Length: 289)

Name: NF18291_low_38
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18291_low_38
NF18291_low_38
[»] chr4 (7 HSPs)
chr4 (16-289)||(37257061-37257346)
chr4 (143-288)||(37237606-37237751)
chr4 (143-289)||(37232690-37232824)
chr4 (213-286)||(37244881-37244954)
chr4 (110-194)||(37253022-37253106)
chr4 (58-122)||(37253136-37253200)
chr4 (58-106)||(37237812-37237860)
[»] chr6 (4 HSPs)
chr6 (213-289)||(14253957-14254033)
chr6 (213-289)||(14316685-14316761)
chr6 (209-289)||(14248147-14248227)
chr6 (130-191)||(14351662-14351723)
[»] scaffold1176 (2 HSPs)
scaffold1176 (145-289)||(303-447)
scaffold1176 (143-191)||(124-172)
[»] scaffold1652 (1 HSPs)
scaffold1652 (218-289)||(595-666)
[»] scaffold0902 (1 HSPs)
scaffold0902 (215-289)||(3203-3277)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 289
Target Start/End: Complemental strand, 37257346 - 37257061
Alignment:
Q  16 atatcacccgttgccactccacccaaatcctctcaggcaccatctccttcagctgtctcaccggtggcatctcctcccatacctgtgaagaacgctcctt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37257346 atatcacccgttgccactccacccaaatcctctcaggcaccatctccttccgctgtctcaccggtggcatctcctcccgtacctgtgaagaacgctcctt 37257247  T
Q  116 ctccttcc------------tctgactctcccgctgtttctcctgctgttactccatcatccatctctactactccttctgaagcaccttcaccttcaga 203  Q
    ||||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37257246 ctccttcccctcctgcttcctctgactctcccgctgtttctcctgctgttactccatcatccatctctactactccttctgaagcaccttcaccttcaga 37257147  T
Q  204 caactccgccgccgcttttaacagattcaccgttgctggatctgccgctgttatggttttcgctgctgctttgatgatgtagagag 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  37257146 caactccgccgccgcttttaacagattcaccgttgctggatctgctgctgttatggttttcgccgctgctttgatgatgtagagag 37257061  T

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Target: chr4; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 143 - 288
Target Start/End: Complemental strand, 37237751 - 37237606
Alignment:
Q  143 ctcctgctgttactccatcatccatctctactactccttctgaagcaccttcaccttcagacaactccgccgccgcttttaacagattcaccgttgctgg 242  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||  |||||| || |||||||||||| |||| |     
T  37237751 ctcctgctgttactccatcatccatctctactcctccttctgaagcaccttcaccttctgataactccatcgccgcattgaacagattcacctttgccgt 37237652  T
Q  243 atctgccgctgttatggttttcgctgctgctttgatgatgtagaga 288  Q
    |||||| |||| | | ||||| ||||| ||||||||||||||||||    
T  37237651 atctgctgctgctgttgtttttgctgcagctttgatgatgtagaga 37237606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 143 - 289
Target Start/End: Complemental strand, 37232824 - 37232690
Alignment:
Q  143 ctcctgctgttactccatcatccatctctactactccttctgaagcaccttcaccttcagacaactccgccgccgcttttaacagattcaccgttgctgg 242  Q
    |||||||||||||||||||||| ||||| ||| ||||| |||||||||| |||         ||   || ||||||||| || |||||||||||||| ||    
T  37232824 ctcctgctgttactccatcatcgatctccactcctcctgctgaagcaccatca---------aa---cggcgccgctttgaatagattcaccgttgccgg 37232737  T
Q  243 atctgccgctgttatggttttcgctgctgctttgatgatgtagagag 289  Q
    |||||| |||||| || |||||||||| |||||||||||||||||||    
T  37232736 atctgctgctgttgtgattttcgctgccgctttgatgatgtagagag 37232690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 286
Target Start/End: Complemental strand, 37244954 - 37244881
Alignment:
Q  213 cgccgcttttaacagattcaccgttgctggatctgccgctgttatggttttcgctgctgctttgatgatgtaga 286  Q
    ||||||||| ||||||||||| ||||| |||||||| |||||| ||||||||||||||| ||||||||| ||||    
T  37244954 cgccgctttcaacagattcactgttgccggatctgctgctgttgtggttttcgctgctgttttgatgatataga 37244881  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 37253106 - 37253022
Alignment:
Q  110 ctccttctccttcctctgactctcccgctgtttctcctgctgttactccatcatccatctctactactccttctgaagcaccttc 194  Q
    ||||| || |||| || |||||||||||||| ||||||||| |||||||||||||||| || ||| ||||||| |||| ||||||    
T  37253106 ctcctcctgcttcatccgactctcccgctgtctctcctgctcttactccatcatccatttccactcctccttccgaaggaccttc 37253022  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 122
Target Start/End: Complemental strand, 37253200 - 37253136
Alignment:
Q  58 tctccttcagctgtctcaccggtggcatctcctcccatacctgtgaagaacgctccttctccttc 122  Q
    ||||| || |||| |||||||| ||||||| ||||||||||||||||||||||||| ||||||||    
T  37253200 tctccctccgctgactcaccggcggcatctgctcccatacctgtgaagaacgctccatctccttc 37253136  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 37237860 - 37237812
Alignment:
Q  58 tctccttcagctgtctcaccggtggcatctcctcccatacctgtgaaga 106  Q
    ||||| || |||| |||||||||||||||||||||| ||||||||||||    
T  37237860 tctccctccgctgactcaccggtggcatctcctcccgtacctgtgaaga 37237812  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 14254033 - 14253957
Alignment:
Q  213 cgccgcttttaacagattcaccgttgctggatctgccgctgttatggttttcgctgctgctttgatgatgtagagag 289  Q
    ||||||||| |||||||| || |||||||||||||| |||||  |||||||||||||||||||||||||||||||||    
T  14254033 cgccgctttgaacagatttacagttgctggatctgctgctgtcgtggttttcgctgctgctttgatgatgtagagag 14253957  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 14316761 - 14316685
Alignment:
Q  213 cgccgcttttaacagattcaccgttgctggatctgccgctgttatggttttcgctgctgctttgatgatgtagagag 289  Q
    ||||||||| |||||||| ||| |||| |||||||| |||||  |||||||||||||||||||||||||||||||||    
T  14316761 cgccgctttgaacagatttacccttgccggatctgctgctgtcgtggttttcgctgctgctttgatgatgtagagag 14316685  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 209 - 289
Target Start/End: Complemental strand, 14248227 - 14248147
Alignment:
Q  209 ccgccgccgcttttaacagattcaccgttgctggatctgccgctgttatggttttcgctgctgctttgatgatgtagagag 289  Q
    ||||||||||||| |||||||| || ||||| |||||| | |||||  ||||||| | |||||||||||||||||||||||    
T  14248227 ccgccgccgctttgaacagatttacagttgccggatctactgctgtcgtggtttttgttgctgctttgatgatgtagagag 14248147  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 191
Target Start/End: Complemental strand, 14351723 - 14351662
Alignment:
Q  130 tctcccgctgtttctcctgctgttactccatcatccatctctactactccttctgaagcacc 191  Q
    |||||||||||  ||||||||||||||||||||||  |||||||| | || ||| |||||||    
T  14351723 tctcccgctgtcgctcctgctgttactccatcatcagtctctactccaccatctcaagcacc 14351662  T

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Target: scaffold1176 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 289
Target Start/End: Original strand, 303 - 447
Alignment:
Q  145 cctgctgttactccatcatccatctctactactccttctgaagcaccttcaccttcagacaactccgccgccgcttttaacagattcaccgttgctggat 244  Q
    |||||| |||||||||| |||||||||||  |||| ||| ||||||| ||| | ||    |||  |||||||||||| |||||||| || ||||| ||||    
T  303 cctgctattactccatcgtccatctctacccctccatctaaagcaccatcaacgtccacaaacgacgccgccgctttgaacagatttacagttgccggat 402  T
Q  245 ctgccgctgttatggttttcgctgctgctttgatgatgtagagag 289  Q
    || | |||||  ||||||||  |||||||||||||||||||||||    
T  403 ctactgctgtcgtggttttcattgctgctttgatgatgtagagag 447  T

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Target: scaffold1176; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 191
Target Start/End: Original strand, 124 - 172
Alignment:
Q  143 ctcctgctgttactccatcatccatctctactactccttctgaagcacc 191  Q
    |||||||||| ||||||||||| ||||||||| |||| ||| |||||||    
T  124 ctcctgctgtgactccatcatcgatctctactcctccatctcaagcacc 172  T

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Target: scaffold1652 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 595 - 666
Alignment:
Q  218 cttttaacagattcaccgttgctggatctgccgctgttatggttttcgctgctgctttgatgatgtagagag 289  Q
    |||| |||||||| || ||||| |||||||| |||||  |||||||| ||||||||||||||||||||||||    
T  595 ctttgaacagatttacagttgccggatctgctgctgtcgtggttttcactgctgctttgatgatgtagagag 666  T

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Target: scaffold0902 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 215 - 289
Target Start/End: Complemental strand, 3277 - 3203
Alignment:
Q  215 ccgcttttaacagattcaccgttgctggatctgccgctgttatggttttcgctgctgctttgatgatgtagagag 289  Q
    ||||||| |||||||| || ||||| |||||||| |||||  |||||||| | ||||||||||||||||||||||    
T  3277 ccgctttgaacagatttacagttgccggatctgctgctgtcgtggttttcacggctgctttgatgatgtagagag 3203  T

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