View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_low_39 (Length: 275)
Name: NF18291_low_39
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 14716786 - 14717035
Alignment:
| Q |
19 |
taatcagcttgaagaaagtcaaggtaagaatcccatttgtttccaatgacctaattagaagaaacagatcaaatttagcataaattataatcataaaccc |
118 |
Q |
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| T |
14716786 |
taatcagcttgaagaaagtcaaggtaagaatcccatttgtttccaatgacctaattagaagaaacagatcaaatttagcataaattataatcataaaccc |
14716885 |
T |
|
| Q |
119 |
taaatttcaaaatcgttaaaaattatgaaactttataactttaatctatgaaatgcaacaaaaagtgcatgaaatagagaatattagaaagattagaaac |
218 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
14716886 |
taaatttcaaaatcgttaaaaattgtgaaactttataactttaatctatgaaatgcaacaaaaagtgcatgaaatggagaatattagaaagattagaaac |
14716985 |
T |
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| Q |
219 |
ctttccgcaggtgaaacaacgaactgggataatcatcttcctctctgctc |
268 |
Q |
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| T |
14716986 |
ctttccgcaggtgaaacaacgaactgggataatcatcttcctctctgctc |
14717035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 14706795 - 14706850
Alignment:
| Q |
207 |
aagattagaaacctttccgcaggtgaaacaacgaactgggataatcatcttcctct |
262 |
Q |
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| T |
14706795 |
aagagtagaaacctttccacaggtgaaacagcgaacagggataatcatctttctct |
14706850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 14706659 - 14706737
Alignment:
| Q |
48 |
atcccatttgtttccaatgacctaattagaagaaacagatcaaatttagcataaattataatcataaaccctaaatttcaaaa |
130 |
Q |
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| T |
14706659 |
atcccatttgtctccaacgacctaattagaa--accaaaacgaatttagcatcaatta--atcataaaccctaaattttaaaa |
14706737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 28891199 - 28891262
Alignment:
| Q |
19 |
taatcagcttgaagaaagtcaaggtaagaatcccatttgtttccaatgacctaattagaagaaa |
82 |
Q |
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||||| |||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
28891199 |
taatctgcttgaagaaagtccaggtaagagtcccatttgtttccaatgacctaattggaagaaa |
28891262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 28621574 - 28621630
Alignment:
| Q |
64 |
atgacctaattagaagaaacagatcaaatttagcataaattataatcataaaccctaaa |
122 |
Q |
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||||||||||||||||||||| ||| |||||||||| ||| |||| |||||||||||| |
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| T |
28621574 |
atgacctaattagaagaaacaaatcgaatttagcatgaat--taattataaaccctaaa |
28621630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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