View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_low_4 (Length: 668)
Name: NF18291_low_4
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_low_4 |
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| [»] chr4 (10 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 618; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 19 - 668
Target Start/End: Original strand, 36999929 - 37000578
Alignment:
| Q |
19 |
atgtttgtattacaaataacaattacacgaataatatgaactcacgggattggtctatacctctatgttttccgccaaacagcagattaagagtttgttg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36999929 |
atgtttgtattacaaataacaattacacgaataatatgaactcaagggattggtctatacctctatgttttccgccaaacagcagattaagagtttgttg |
37000028 |
T |
|
| Q |
119 |
acttcttaaaacattctcacgaagtgatacgtgcctttcgttataattgtttgtttgtcatatcaaaaataacaatactcaaactaatgatcattttccg |
218 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
37000029 |
acttcttaaaacattctcacgaaatgatacgtgcctttcgttataattgtttgtttgtcgtatcaaaaataacaatactcaaactaatgatcattttcca |
37000128 |
T |
|
| Q |
219 |
tttgaaaatcagcaaagttttggtacagctgttataagtgaagaaggcttgctacaccaatttccttttcaattttcaagcaaaatgtatccttgtggta |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
37000129 |
tttgaaaatcagcaaagttttggtacagctgttataagtgaagaaggcttgctacaccaatttccttttcaactttcaagcaaaatgtatccctgtggta |
37000228 |
T |
|
| Q |
319 |
aggttatctacagcaactttcaagtttgaattttagacaagtgctttttccctattaagtgagaggccatgtattcttcacttgaaatcaaaacattgca |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37000229 |
aggttatctacagcaactttcaagtttgaattttagacaagtgctttttccctattaagtgagaggccatgtattcttcacttgaaatcaaaacattgca |
37000328 |
T |
|
| Q |
419 |
gactatacatattattttggaattaatcttcctaaagggttcttcatgcaggtttatcgctttcaaagctaattcacaattagccttgtgtttcctccca |
518 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37000329 |
gactatacatattattttggaattaatcctcctaaagggttcttcatgcaggtttatcgctttcaaagctaattcacaattagccttgtgtttcctccca |
37000428 |
T |
|
| Q |
519 |
ttgaggtgggaattcaaagttttctcgctcgatgttgttacaatacataaagcacaagtccacttcttcggcacttccttcggtgtagcagaactctgag |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
37000429 |
ttgaggtgggaattcaaagttttctcgctcgatgttgttacaatacataaagcacaagtccacttcttcggcacttccttctgtgtagcagaactctgag |
37000528 |
T |
|
| Q |
619 |
gtagctccccactagcagtgtcactctccgctgttccttttgtttcttct |
668 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37000529 |
gtagctccccactagcagtgtcactctccgctgttccttttgtttcttct |
37000578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 210 - 453
Target Start/End: Original strand, 36995403 - 36995643
Alignment:
| Q |
210 |
cattttccgtttgaaaatcagcaaagttttggtacagctgttataagtgaagaaggcttgctacaccaatttccttttcaattttcaagcaaaatgtatc |
309 |
Q |
| |
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|||||||| ||| | ||||||||| ||| |||||||||| |||| |||| |||||||||||||||||||||| |||||||| ||||||||||| |||| |
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| T |
36995403 |
cattttccattttagaatcagcaatgttatggtacagctattatcagtggagaaggcttgctacaccaattttcttttcaactttcaagcaaa---tatc |
36995499 |
T |
|
| Q |
310 |
cttgtggtaaggttatctacagcaactttcaagtttgaattttagacaagtgctttttccctattaagtgagaggccatgtattcttcacttgaaatcaa |
409 |
Q |
| |
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||| | | |||||||| || |||| |||| ||| || |||||||||||||| |||| ||| ||||||||||| ||| || ||||||| || || |
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| T |
36995500 |
cttctaacatggttatctcaagtaactatcaacttttaacattagacaagtgcttccacccttttatgtgagaggccacgtagtcctcacttggaagcat |
36995599 |
T |
|
| Q |
410 |
aacattgcagactatacatattattttggaattaatcttcctaa |
453 |
Q |
| |
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|| ||| |||||| ||||||||||||||||||||||| |||||| |
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| T |
36995600 |
aatattacagactttacatattattttggaattaatcatcctaa |
36995643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 66 - 609
Target Start/End: Original strand, 36979357 - 36979909
Alignment:
| Q |
66 |
gattggtctatacctctatgttttccgccaaacagcagattaagagtttgttgacttcttaaaacattctcacgaagtgatacgtgcctttcgttataat |
165 |
Q |
| |
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|||||||||||||||| ||||||| || ||| |||| || ||||||||||||||| ||||||||||| |||| |||||| | |||||| |||||||| |
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| T |
36979357 |
gattggtctatacctcggtgttttctgcaaaatagcaaatcaagagtttgttgactccttaaaacatttacacggagtgattcttgccttgtgttataat |
36979456 |
T |
|
| Q |
166 |
tgtttgtttgtcatatcaaaaataacaatactcaaactaatgat-cattttccgtttgaaaatcagcaaagttttggtacagctgtta---taagtgaag |
261 |
Q |
| |
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| ||||| |||| |||| || ||||||| |||||||| | |||||||| ||| | ||| |||| ||||||||||| | || | ||| ||| |
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| T |
36979457 |
tatttgt----cataccaaa--tagcaatacttaaactaataaagcattttccatttaagaattggcaatgttttggtacacttaataatatcagtcaag |
36979550 |
T |
|
| Q |
262 |
aaggcttgctacaccaatttccttttcaattttcaagcaaaatgtatccttgtggtaaggttatctacagcaactttcaagtttgaattttagacaagtg |
361 |
Q |
| |
|
||| |||||||| ||||||| |||||||| ||||||||||||||| || | | || ||||||| | |||| |||| ||||||||||||||||||| |
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|
| T |
36979551 |
aag-cttgctaccccaatttgcttttcaactttcaagcaaaatgt--ccctacgctatggttatcaa----aactatcaactttgaattttagacaagtg |
36979643 |
T |
|
| Q |
362 |
ctttttccctattaagtgagaggccatgtattcttcacttgaaatcaaaacattgcagactatacatattattttggaattaatcttcctaaag------ |
455 |
Q |
| |
|
||| || ||| |||||| ||||| || || ||||||| || || |||||| |||||| ||||||||| ||||||||||||| |||||||| |
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| T |
36979644 |
cttccatccatttacgtgagatgccatatactcctcacttggaagcataacattacagactttacatattaatttggaattaatcatcctaaagggttct |
36979743 |
T |
|
| Q |
456 |
----ggttcttcat----gcaggtttatc----gctttcaaagctaattcacaattagccttgtgtttcctcccattgaggtgggaattcaaagttttct |
543 |
Q |
| |
|
|||||||| ||||||| | |||||||||||| ||||||| ||| |||||||||||||||| | || |||||||| ||| ||| |
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| T |
36979744 |
gaagggttcttctgcggagcaggttgcttctttgctttcaaagctgcttcacaagcagctctgtgtttcctcccattaatatgagaattcaaggttatct |
36979843 |
T |
|
| Q |
544 |
cgctcgatgttgttacaatacataaagcacaagtccacttcttcggcacttccttcggtgtagcag |
609 |
Q |
| |
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|||||| |||||||| | |||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
36979844 |
ggctcgaagttgttaccaaacataaagcacaagtccactctttcggcacttccttctgtgtagcag |
36979909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 505 - 606
Target Start/End: Original strand, 36986226 - 36986327
Alignment:
| Q |
505 |
tgtgtttcctcccattgaggtgggaattcaaagttttctcgctcgatgttgttacaatacataaagcacaagtccacttcttcggcacttccttcggtgt |
604 |
Q |
| |
|
|||||||| | ||| | |||||||||||||| ||||||| |||| ||||||||| | |||||||||||||||||||| ||| ||||||||||| |||| |
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|
| T |
36986226 |
tgtgtttctttccactcaggtgggaattcaagattttctcactcgttgttgttaccaaacataaagcacaagtccactctttctgcacttccttctgtgt |
36986325 |
T |
|
| Q |
605 |
ag |
606 |
Q |
| |
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|| |
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|
| T |
36986326 |
ag |
36986327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 477 - 559
Target Start/End: Original strand, 36978921 - 36979003
Alignment:
| Q |
477 |
gctttcaaagctaattcacaattagccttgtgtttcctcccattgaggtgggaattcaaagttttctcgctcgatgttgttac |
559 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||||||||||||| || ||||||||||| ||| ||| ||||||||||||||| |
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|
| T |
36978921 |
gctttcaaagcagcttcacaactagccctgtgtttcctcccattaagatgggaattcaaggttatcttgctcgatgttgttac |
36979003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 172
Target Start/End: Original strand, 9450178 - 9450251
Alignment:
| Q |
99 |
agcagattaagagtttgttgacttcttaaaacattctcacgaagtgatacgtgcctttcgttataattgtttgt |
172 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||| |||| |||||| | ||||||| ||||||||| ||||| |
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|
| T |
9450178 |
agcaaattaagagtttgttgactccttaaaacatttacacgtagtgattcttgccttttgttataattatttgt |
9450251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 505 - 606
Target Start/End: Original strand, 36980539 - 36980640
Alignment:
| Q |
505 |
tgtgtttcctcccattgaggtgggaattcaaagttttctcgctcgatgttgttacaatacataaagcacaagtccacttcttcggcacttccttcggtgt |
604 |
Q |
| |
|
|||||||||| ||||| ||||||||| |||| |||||| | |||||||||||| | ||||| |||||||||||||| || ||||||||||| |||| |
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| T |
36980539 |
tgtgtttccttccattaaggtgggaaatcaagtctttctcacgcgatgttgttaccaaacatatagcacaagtccactctctctgcacttccttctgtgt |
36980638 |
T |
|
| Q |
605 |
ag |
606 |
Q |
| |
|
|| |
|
|
| T |
36980639 |
ag |
36980640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 563 - 665
Target Start/End: Original strand, 36995768 - 36995867
Alignment:
| Q |
563 |
acataaagcacaagtccacttcttcggcacttccttcggtgtagcagaactctgaggtagctccccactagcagtgtcactctccgctgttccttttgtt |
662 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| ||||| |||||| |||||||||| | ||| |||| ||| ||| ||||||| ||||||||||| ||| |
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| T |
36995768 |
acataaagcacaagtccactctttctgcactgccttctgtgtag---aactctgaggaacctctccacaagctgtgacactctctgctgttcctttggtt |
36995864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 505 - 605
Target Start/End: Original strand, 36996414 - 36996514
Alignment:
| Q |
505 |
tgtgtttcctcccattgaggtgggaattcaaagttttctcgctcgatgttgttacaatacataaagcacaagtccacttcttcggcacttccttcggtgt |
604 |
Q |
| |
|
|||||||||||||| ||||||| |||||||| ||| | ||| | |||||||| | ||||||||||||||||||||| ||| ||| ||||||| |||| |
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|
| T |
36996414 |
tgtgtttcctcccagtgaggtgcgaattcaagtctttattgcttgtagttgttaccaaacataaagcacaagtccactttttctgcatttccttctgtgt |
36996513 |
T |
|
| Q |
605 |
a |
605 |
Q |
| |
|
| |
|
|
| T |
36996514 |
a |
36996514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 477 - 541
Target Start/End: Original strand, 36984404 - 36984468
Alignment:
| Q |
477 |
gctttcaaagctaattcacaattagccttgtgtttcctcccattgaggtgggaattcaaagtttt |
541 |
Q |
| |
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|||||||||||| ||||||| ||| |||||||||||||||| || ||||||||||| ||||| |
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| T |
36984404 |
gctttcaaagctgcttcacaagcagctctgtgtttcctcccattaagatgggaattcaatgtttt |
36984468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 14160029 - 14159956
Alignment:
| Q |
99 |
agcagattaagagtttgttgacttcttaaaacattctcacgaagtgatacgtgcctttcgttataattgtttgt |
172 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||| |||| |||||| | ||||||| ||||||||| ||||| |
|
|
| T |
14160029 |
agcaaattaagagtttgttgactccttaaaacatttacacgtagtgattcttgcctttggttataattatttgt |
14159956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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