View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18291_low_41 (Length: 274)

Name: NF18291_low_41
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18291_low_41
NF18291_low_41
[»] chr4 (9 HSPs)
chr4 (21-272)||(36995607-36995858)
chr4 (82-272)||(36980497-36980687)
chr4 (123-246)||(36986225-36986354)
chr4 (174-272)||(36996464-36996562)
chr4 (21-106)||(36979699-36979784)
chr4 (174-252)||(36979855-36979939)
chr4 (144-217)||(36984452-36984525)
chr4 (182-272)||(37000473-37000566)
chr4 (21-57)||(37000327-37000363)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 21 - 272
Target Start/End: Original strand, 36995607 - 36995858
Alignment:
Q  21 cagactttacatattattttggaattaatcatcctaataggttctgataggttcttttgcagggtagtttgcttctttgctttcaacacttccatagttt 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36995607 cagactttacatattattttggaattaatcatcctaataggttctgataggttcttttgcagggtaggttgcttctttgctttcaacacttccatagttt 36995706  T
Q  121 ccctgtgtctccttcccctgaggtgggaaatcaaggttttctcacacgtaaccgttaccaaacataaagcacaagtccactctttctgcactgccttctg 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36995707 ccctgtgtctccttcccctgaggtgggaaatcaaggttttctcacacgtaaccgttaccaaacataaagcacaagtccactctttctgcactgccttctg 36995806  T
Q  221 tgtagaactctgaggaacctctccacaagctgtgacactctctgctgctcct 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36995807 tgtagaactctgaggaacctctccacaagctgtgacactctctgctgttcct 36995858  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 272
Target Start/End: Original strand, 36980497 - 36980687
Alignment:
Q  82 gggtagtttgcttctttgctttcaacacttccatagtttccctgtgtctccttcccctgaggtgggaaatcaaggttttctcacacgtaaccgttaccaa 181  Q
    |||||| ||||||||||| | | ||  ||||  |||| ||||||||| |||||||  | |||||||||||||||  |||||||| ||     ||||||||    
T  36980497 gggtaggttgcttctttgatattaaagcttcactagtatccctgtgtttccttccattaaggtgggaaatcaagtctttctcacgcgatgttgttaccaa 36980596  T
Q  182 acataaagcacaagtccactctttctgcactgccttctgtgtagaactctgaggaacctctccacaagctgtgacactctctgctgctcct 272  Q
    ||||| |||||||||||||||| |||||||| ||||||||||||||||| ||||||| ||||||| |||  |  |||||||||||| ||||    
T  36980597 acatatagcacaagtccactctctctgcacttccttctgtgtagaactccgaggaacttctccaccagccctttcactctctgctgttcct 36980687  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 123 - 246
Target Start/End: Original strand, 36986225 - 36986354
Alignment:
Q  123 ctgtgtctccttcccctgaggtgggaaatcaaggttttctcacacgtaaccgttaccaaacataaagcacaagtccactctttctgcactgccttctgt- 221  Q
    |||||| || |||| || ||||||||| ||||| ||||||||| |||    ||||||||||||||||||||||||||||||||||||||| ||||||||     
T  36986225 ctgtgtttctttccactcaggtgggaattcaagattttctcactcgttgttgttaccaaacataaagcacaagtccactctttctgcacttccttctgtg 36986324  T
Q  222 -----gtagaactctgaggaacctctccac 246  Q
         |||||||||||||||||||||||||    
T  36986325 tagaagtagaactctgaggaacctctccac 36986354  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 174 - 272
Target Start/End: Original strand, 36996464 - 36996562
Alignment:
Q  174 gttaccaaacataaagcacaagtccactctttctgcactgccttctgtgtagaactctgaggaacctctccacaagctgtgacactctctgctgctcct 272  Q
    |||||||||||||||||||||||||||| |||||||| | ||||||||||| ||  ||  |||| |||||||| |||| || |||||||||||| ||||    
T  36996464 gttaccaaacataaagcacaagtccactttttctgcatttccttctgtgtacaatcctttggaaactctccaccagctctgtcactctctgctgttcct 36996562  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 106
Target Start/End: Original strand, 36979699 - 36979784
Alignment:
Q  21 cagactttacatattattttggaattaatcatcctaataggttctgataggttcttttgcagggtagtttgcttctttgctttcaa 106  Q
    |||||||||||||||| ||||||||||||||||||||  ||||||||  ||||||| ||| | | || ||||||||||||||||||    
T  36979699 cagactttacatattaatttggaattaatcatcctaaagggttctgaagggttcttctgcggagcaggttgcttctttgctttcaa 36979784  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 252
Target Start/End: Original strand, 36979855 - 36979939
Alignment:
Q  174 gttaccaaacataaagcacaagtccactctttctgcactgccttctgt------gtagaactctgaggaacctctccacaagctg 252  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||      ||||||||| ||||||||||||||| |||||    
T  36979855 gttaccaaacataaagcacaagtccactctttcggcacttccttctgtgtagcagtagaactcggaggaacctctccaccagctg 36979939  T

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Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 36984452 - 36984525
Alignment:
Q  144 tgggaaatcaaggttttctcacacgtaaccgttaccaaacataaagcacaagtccactctttctgcactgcctt 217  Q
    |||||| |||| ||||| ||||| | ||| |||||||||||||||||||| | |||||||||||||||| ||||    
T  36984452 tgggaattcaatgttttttcacatggaactgttaccaaacataaagcacatgcccactctttctgcacttcctt 36984525  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 37000473 - 37000566
Alignment:
Q  182 acataaagcacaagtccactctttctgcactgccttctgtgt---agaactctgaggaacctctccacaagctgtgacactctctgctgctcct 272  Q
    ||||||||||||||||||||  ||| ||||| ||||||||||   |||||||||||| | ||| |||| ||| ||| ||||||| |||| ||||    
T  37000473 acataaagcacaagtccacttcttcggcacttccttctgtgtagcagaactctgaggtagctccccactagcagtgtcactctccgctgttcct 37000566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 37000327 - 37000363
Alignment:
Q  21 cagactttacatattattttggaattaatcatcctaa 57  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  37000327 cagactatacatattattttggaattaatcctcctaa 37000363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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