View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18291_low_42 (Length: 272)
Name: NF18291_low_42
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_low_42 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 70 - 268
Target Start/End: Complemental strand, 1204087 - 1203889
Alignment:
| Q |
70 |
ccccctatatctctacaggccccccaaaattacgatattaacctttttcaaggatgcggtatataaataccgaacagtccggtaggtacataccggagga |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1204087 |
ccccctatatctctacaggccccccaaaattacgatattaaccttttttaaggatgcggtatataaataccaaacagtccggtaggtacataccggagga |
1203988 |
T |
|
| Q |
170 |
acatattttccatttacaaaccaaacacttctttcattttaaggtaagtgagcatcactcacacttctcacaacaaactcattcacgttcttctctctc |
268 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
1203987 |
acatatttcccatttacaaaccaaacacttctttcattttaaggtaagtcagcatcactcacacttctcacaacaaactcactcacgttcttctttctc |
1203889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 6e-77; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 53 - 225
Target Start/End: Complemental strand, 19816719 - 19816544
Alignment:
| Q |
53 |
ggtggttactttttaggccccc---tatatctctacaggccccccaaaattacgatattaacctttttcaaggatgcggtatataaataccgaacagtcc |
149 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19816719 |
ggtggttactttttaggcccccccctatatctctacaggccccccaaaattacgatattaaccttttttaaggatgcggtatataaataccgaacagtcc |
19816620 |
T |
|
| Q |
150 |
ggtaggtacataccggaggaacatattttccatttacaaaccaaacacttctttcattttaaggtaagtgagcatc |
225 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19816619 |
gataggtacataccggaggaacatatttcccatttacaaaccaaacacttcttttattttaaggtaagtgagcatc |
19816544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 216
Target Start/End: Complemental strand, 8208604 - 8208442
Alignment:
| Q |
56 |
ggttactttttaggccccc--tatatctctacaggccccccaaaattacgatattaacctttttcaaggatgcggtatataaataccgaacagtccggta |
153 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| |||||||| | | | ||||||||||||||||||| | || |
|
|
| T |
8208604 |
ggttactttttaggccccccttatatctctacaggtcccacaaaattacgatattgaccttttttatgcgaactatatataaataccgaacagttcagtg |
8208505 |
T |
|
| Q |
154 |
ggtacataccggaggaacatattttccatttacaaaccaaacacttctttcattttaaggtaa |
216 |
Q |
| |
|
||||||||| |||||| ||| || | | |||||||||||||||||||||| |||||||||||| |
|
|
| T |
8208504 |
ggtacatactggaggatcattttctacgtttacaaaccaaacacttcttttattttaaggtaa |
8208442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 204 - 268
Target Start/End: Complemental strand, 19816444 - 19816379
Alignment:
| Q |
204 |
cattttaaggtaagtga-gcatcactcacacttctcacaacaaactcattcacgttcttctctctc |
268 |
Q |
| |
|
||||| ||||||||| | ||||||||||| |||||||||||||||||| |||||||||||| |||| |
|
|
| T |
19816444 |
catttgaaggtaagttaagcatcactcacgcttctcacaacaaactcactcacgttcttctttctc |
19816379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 57 - 225
Target Start/End: Original strand, 46512646 - 46512816
Alignment:
| Q |
57 |
gttactttttaggccccctatatctctacaggccccccaaaattacgatattaacctttttcaaggatgcggtatataaataccgaacagtccggtaggt |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
46512646 |
gttactttttaggccccctatatctctacaggccccccaaaattacgatattaaccttttttaaggatacagtatataaataccgaacagtccggtaggt |
46512745 |
T |
|
| Q |
157 |
--acataccggaggaacatattttccatttacaaaccaaacacttctttcattttaaggtaagtgagcatc |
225 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
46512746 |
acacataccggaggaacatatttcccatttacaaaccaaacacttcttttattttaaggtaagtgagcatc |
46512816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 26937785 - 26937847
Alignment:
| Q |
56 |
ggttactttttaggccccc--tatatctctacaggccccccaaaattacgatattaaccttttt |
117 |
Q |
| |
|
|||| |||| ||||||||| |||||| ||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
26937785 |
ggtttctttgtaggccccccttatatcactataggccccccaaaat-acgatattaaccttttt |
26937847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University