View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_low_43 (Length: 270)
Name: NF18291_low_43
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 7318205 - 7318075
Alignment:
| Q |
30 |
aaaaaacttatttgggagatattagatgttttgtagttaagctgcctttgttgctcgcggcattcaaagtcagcgatgccattcacttttgttcctgctt |
129 |
Q |
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| T |
7318205 |
aaaaaacttatttgggacatattagatgttttgtagttaagctgcctttgttgctcgcggcattcaaattcagcgatgccattcacttttgttcctgctt |
7318106 |
T |
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| Q |
130 |
ctatttaattccactctattgttcttttgtt |
160 |
Q |
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| T |
7318105 |
ctatttaattccactctattgttcttttgtt |
7318075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 7323694 - 7323544
Alignment:
| Q |
19 |
tttggcctatgaaaaaacttatttgggagatattagatgttttgtagttaagctgcctttgttgctcgcggcattcaaagtcagcgatgccattcacttt |
118 |
Q |
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|||||| ||||||||| ||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||||||| ||| | |||||||||||||| |
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| T |
7323694 |
tttggcttatgaaaaagcttatttgggacatattagatgttttgtagtaaagttgcctttgttgttcgcggcattcaaattcaacaatgccattcacttt |
7323595 |
T |
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| Q |
119 |
tgttcctgcttctatttaattccactctattgttcttttgttgaatttggg |
169 |
Q |
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|||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7323594 |
tgttcccgcttctatttaattccactatattgttcttttgttgaatttggg |
7323544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 2492615 - 2492746
Alignment:
| Q |
38 |
tatttgggagatattagatgttttgtagttaagctgcctttgttgctcgcggcattcaaagtcagcgatgccattcacttttgttcctgcttctatttaa |
137 |
Q |
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| T |
2492615 |
tatttggaacatattagatgttttgtagtaaagctgcctttgctgctcgcggcattcaaattcaacgatgccattcatttttgttcctgcttctatttaa |
2492714 |
T |
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| Q |
138 |
ttccactctattgttcttttgttgaatttggg |
169 |
Q |
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||||||||||||||||||||||||| |||||| |
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| T |
2492715 |
ttccactctattgttcttttgttgagtttggg |
2492746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 2502895 - 2503030
Alignment:
| Q |
38 |
tatttgggagatattagatgtttt----gtagttaagctgcctttgttgctcgcggcattcaaagtcagcgatgccattcacttttgttcctgcttctat |
133 |
Q |
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||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| |
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| T |
2502895 |
tatttgggacatattagatgttttttttgtagtaaagctgcctttgttgctcgcggcattcaaattcaacgatgccattcatttttgttcctgcttctat |
2502994 |
T |
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| Q |
134 |
ttaattccactctattgttcttttgttgaatttggg |
169 |
Q |
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| T |
2502995 |
ttaattccactctattgttcttttgttgagtttggg |
2503030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 169
Target Start/End: Complemental strand, 7442340 - 7442190
Alignment:
| Q |
19 |
tttggcctatgaaaaaacttatttgggagatattagatgttttgtagttaagctgcctttgttgctcgcggcattcaaagtcagcgatgccattcacttt |
118 |
Q |
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|||||| ||||||||| ||||||||||| ||||||||||||||| ||| ||||||||| |||||||||| || ||| || ||| | || || |||| | |
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| T |
7442340 |
tttggcttatgaaaaagcttatttgggacatattagatgttttgcagtgaagctgcctatgttgctcgcagctttcgaattcaacaatttcactcaccat |
7442241 |
T |
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| Q |
119 |
tgttcctgcttctatttaattccactctattgttcttttgttgaatttggg |
169 |
Q |
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|||||||| | | |||||| ||| ||||| |||||||||||||||||||| |
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| T |
7442240 |
tgttcctgatcatttttaatgccattctatagttcttttgttgaatttggg |
7442190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 7310624 - 7310569
Alignment:
| Q |
168 |
ggaaaatagttgctattagatgacggtctaaaattattttacaatatccgtcatca |
223 |
Q |
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| T |
7310624 |
ggaaaatagttgctattagatgacggtctaaaattactttacaatatacgtcatca |
7310569 |
T |
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