View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18291_low_46 (Length: 259)

Name: NF18291_low_46
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18291_low_46
NF18291_low_46
[»] chr1 (7 HSPs)
chr1 (21-251)||(49710826-49711056)
chr1 (23-251)||(49683216-49683444)
chr1 (21-251)||(49714467-49714696)
chr1 (23-251)||(49688122-49688343)
chr1 (21-251)||(49215488-49215711)
chr1 (125-251)||(49725242-49725368)
chr1 (120-209)||(49728706-49728795)
[»] chr8 (1 HSPs)
chr8 (109-162)||(44035825-44035878)
[»] chr6 (1 HSPs)
chr6 (110-162)||(30955409-30955461)


Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 49711056 - 49710826
Alignment:
Q  21 cctgattcaattcaagactcttgtaaatccagtgtggaaaatataactcgctagaacaatcaacttcaaccttaatgttctttcttcgaccaaccatctc 120  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49711056 cctgattcaattcaagacgcttgtaaatccagtgtggaaaatataactcgctagaacaatcaacttcaaccttaatgttctttcttcgaccaaccatctc 49710957  T
Q  121 taaaaccatcattccgtaactgtagacatctgacttatgtgacaccccaccaaaatttctagagaacaactctggagcaatatatcctggtgttcccctt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49710956 taaaaccatcattccgtaactgtagacatctgacttatgtgacaccccaccaaaatttctagagaacaactctggagcaatatatcctggtgttcccctt 49710857  T
Q  221 gcaccaaatattgatacaatgctttcttttc 251  Q
    |||||||||||||||||||||||||||||||    
T  49710856 gcaccaaatattgatacaatgctttcttttc 49710826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 49683444 - 49683216
Alignment:
Q  23 tgattcaattcaagactcttgtaaatccagtgtggaaaatataactcgctagaacaatcaacttcaaccttaatgttctttcttcgaccaaccatctcta 122  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||    
T  49683444 tgattcaattcaagacgcttgtagatccaatgtggaaaatataactcgctagaacaatccacttcaactttgatgttctttcttcgaccaaccatttcta 49683345  T
Q  123 aaaccatcattccgtaactgtagacatctgacttatgtgacaccccaccaaaatttctagagaacaactctggagcaatatatcctggtgttccccttgc 222  Q
    ||||||||||||| ||||||||||||||||| || ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||    
T  49683344 aaaccatcattccataactgtagacatctgatttgtgtgacaccccaccaaaatgtctagagaacagctctggagcaatatatcctggtgtcccccttgc 49683245  T
Q  223 accaaatattgatacaatgctttcttttc 251  Q
    |||||||||||||||||||||||||||||    
T  49683244 accaaatattgatacaatgctttcttttc 49683216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 49714696 - 49714467
Alignment:
Q  21 cctgattcaattcaagactcttgtaaatccagtgtggaaaatataactcgctagaacaatcaacttcaaccttaatgttctttcttcgaccaaccatctc 120  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||    
T  49714696 cctgattcaattcaagacgcttgtaaatccagtgtggaaaatataactcgctggaacaatcaacttcaaccttaatgttctttcttcggccaaccatttc 49714597  T
Q  121 taaaaccatcattccgtaactgtagacatctgacttatgtgacaccccaccaaaatttctagagaacaactctggagcaatatatcctggtgttcccctt 220  Q
    ||||||||||||||| ||||| || |||||||| ||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||      
T  49714596 taaaaccatcattccataactataaacatctgatttatgtgacaccccgtcaaaatttctggagaacaactctggagcaatatatcctggtgttcccc-c 49714498  T
Q  221 gcaccaaatattgatacaatgctttcttttc 251  Q
    ||| ||||||| |||||||||||||||||||    
T  49714497 gcaacaaatatggatacaatgctttcttttc 49714467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 49688343 - 49688122
Alignment:
Q  23 tgattcaattcaagactcttgtaaatccagtgtggaaaatataactcgctagaacaatcaacttcaaccttaatgttctttcttcgaccaaccatctcta 122  Q
    |||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||| |||||||| || |||||||||||| |||||||||| |       
T  49688343 tgattcaattcaagacgcttgtaaatccaatgtggaaaatataaatcgctagaacaatccacttcaactttgatgttctttctttgaccaaccattt--- 49688247  T
Q  123 aaaccatcattccgtaactgtagacatctgacttatgtgacaccccaccaaaatttctagagaacaactctggagcaatatatcctggtgttccccttgc 222  Q
      ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||||||||||  ||||||||| |||||||||||    
T  49688246 --accatcattccataactgtagacatctgatttatgggacaccccaccaaaatttcgggagaacaactctggagca--atatcctggcgttccccttgc 49688151  T
Q  223 accaaatattgatacaatgctttcttttc 251  Q
    ||||||||| |||||||||||||||||||    
T  49688150 accaaatatggatacaatgctttcttttc 49688122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 21 - 251
Target Start/End: Complemental strand, 49215711 - 49215488
Alignment:
Q  21 cctgattcaattcaagactcttgtaaatccagtgtggaaaatataactcgctagaacaatcaacttcaaccttaatgttctttcttcgaccaaccatctc 120  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||| |||||| ||    
T  49215711 cctgattcaattcaagacgcttgtaaatccagtgtggaaaatattactc-------caatcaacttcaaccttaatgttctttcttcgacaaaccatttc 49215619  T
Q  121 taaaaccatcattccgtaactgtagacatctgacttatgtgacaccccaccaaaatttctagagaacaactctggagcaatatatcctggtgttcccctt 220  Q
    ||||||||||||||| ||||| || |||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||| |||    
T  49215618 taaaaccatcattccataactataaacatctgatttatgtgacaccccaccaaaatgtctggagaacaactctggagcaatatatcctggcgttcctctt 49215519  T
Q  221 gcaccaaatattgatacaatgctttcttttc 251  Q
    || |||||||  ||| |||| ||||||||||    
T  49215518 gcgccaaatacggatgcaatactttcttttc 49215488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 251
Target Start/End: Complemental strand, 49725368 - 49725242
Alignment:
Q  125 accatcattccgtaactgtagacatctgacttatgtgacaccccaccaaaatttctagagaacaactctggagcaatatatcctggtgttccccttgcac 224  Q
    ||||||||||| |||||||| ||||||||||||||||||||  |||||||||| ||||| || | ||| || |||||||| ||||  ||||| || ||||    
T  49725368 accatcattccataactgtaaacatctgacttatgtgacactgcaccaaaattcctagaaaatacctcgggggcaatatagcctgccgttcctctcgcac 49725269  T
Q  225 caaatattgatacaatgctttcttttc 251  Q
    ||||||||||||| || ||||||||||    
T  49725268 caaatattgataccatactttcttttc 49725242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 49728795 - 49728706
Alignment:
Q  120 ctaaaaccatcattccgtaactgtagacatctgacttatgtgacaccccaccaaaatttctagagaacaactctggagcaatatatcctg 209  Q
    |||||||||||||||| ||||| || ||||| || || || || || ||||||||||||||||||||||  ||||||||||| |||||||    
T  49728795 ctaaaaccatcattccataactatatacatcagatttgtgagagacgccaccaaaatttctagagaacacttctggagcaatgtatcctg 49728706  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 44035878 - 44035825
Alignment:
Q  109 accaaccatctctaaaaccatcattccgtaactgtagacatctgacttatgtga 162  Q
    ||||||||| ||||  | ||||||||||||||| |||||||| |||||||||||    
T  44035878 accaaccatttctagcaacatcattccgtaactatagacatcagacttatgtga 44035825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 30955461 - 30955409
Alignment:
Q  110 ccaaccatctctaaaaccatcattccgtaactgtagacatctgacttatgtga 162  Q
    |||||||||||||||| ||||||||| ||||| || ||||| ||||| |||||    
T  30955461 ccaaccatctctaaaagcatcattccataactataaacatcagacttgtgtga 30955409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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