View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_low_49 (Length: 237)
Name: NF18291_low_49
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_low_49 |
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| [»] chr8 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 37922530 - 37922311
Alignment:
| Q |
18 |
ggtactggtaaatctagcaggtattatggagagagctgatgagtcattgttaccaggagtatacaaagagattggtgatgaactcaacgctgacccaact |
117 |
Q |
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| T |
37922530 |
ggtactggtaaatctagcaggtattatggagagagctgatgagtcattgttaccaggagtatacaaagagattggtgatgaactcaacgctgacccaact |
37922431 |
T |
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| Q |
118 |
gcgttaggttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttaccttgtcacacgacacaatcgtgcacatgtcattg |
217 |
Q |
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| T |
37922430 |
gcgttaggttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttaccttgccacacgacacaatcgtgcacatgtcattg |
37922331 |
T |
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| Q |
218 |
ctcttggtgcttttctttgg |
237 |
Q |
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| T |
37922330 |
ctcttggtgcttttctttgg |
37922311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 37926109 - 37925894
Alignment:
| Q |
22 |
ctggtaaatctagcaggtattatggagagagctgatgagtcattgttaccaggagtatacaaagagattggtgatgaactcaacgctgacccaactgcgt |
121 |
Q |
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| T |
37926109 |
ctggtaaatctagcaagtattatgcagagagctgatgagtcattgcttccaggagtatacaaagaggttggtgctgaacttaacgctgatccaactgcgt |
37926010 |
T |
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| Q |
122 |
taggttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttaccttgtcacacgacacaatcgtgcacatgtcattgctct |
221 |
Q |
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| T |
37926009 |
taggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacctggccacgcgacacaatcgtgcacatgttattgctct |
37925910 |
T |
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| Q |
222 |
tggtgcttttctttgg |
237 |
Q |
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| T |
37925909 |
aggtgcttttctttgg |
37925894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 37937800 - 37937585
Alignment:
| Q |
22 |
ctggtaaatctagcaggtattatggagagagctgatgagtcattgttaccaggagtatacaaagagattggtgatgaactcaacgctgacccaactgcgt |
121 |
Q |
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||||| |||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||| | |||| || || ||||||||||| || || | |
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| T |
37937800 |
ctggtgaatctagcaggtattatggaacgagccgatgaatcattgttacctggagtatacaaagaagtcggtgctgctcttaacgctgaccccaccgcct |
37937701 |
T |
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| Q |
122 |
taggttctctcactcttttccgatccctggttcaagcattctgttaccctcttgctgcttaccttgtcacacgacacaatcgtgcacatgtcattgctct |
221 |
Q |
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| T |
37937700 |
taggttctctcactcttttccgatcacttgttcaatcattctgttaccctcttgctacttacctcgccacccgttacaatcgttcacatgttattgctct |
37937601 |
T |
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| Q |
222 |
tggtgcttttctttgg |
237 |
Q |
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| T |
37937600 |
tggtgcttttctttgg |
37937585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 26285244 - 26285282
Alignment:
| Q |
199 |
aatcgtgcacatgtcattgctcttggtgcttttctttgg |
237 |
Q |
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| T |
26285244 |
aatcgtgctcatgttattgctcttggtgcttttctttgg |
26285282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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