View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18291_low_5 (Length: 631)
Name: NF18291_low_5
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18291_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 237 - 616
Target Start/End: Complemental strand, 37922087 - 37921711
Alignment:
| Q |
237 |
cataatgaaaaattgattcttaaaacttcacttttttattcttgaacttttctacaactgttttgatagtgaaaattcattgtcacttaacaaatcatac |
336 |
Q |
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| T |
37922087 |
cataatgaaaaattgattcttaaaacttcacttttttattctagtacttttctacaactgttttgatagtgaaaattcattgtcacttaacaactcatat |
37921988 |
T |
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| Q |
337 |
ttattttccnnnnnnnnnnnngaaacaattttgatacagtacacacttagatagatttagttattggtttcaagtcttaatgatctctcttagacaaatc |
436 |
Q |
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| T |
37921987 |
ttatattccaaaaaaaaaa---aaacaattttgatacagtacacacttagatagatttagttattggtttcaagtcttaatgatctctcttagacaaatc |
37921891 |
T |
|
| Q |
437 |
attcggtagaacttgagttcgattcatgtggaataattattagtcggactttagttatttcttagccgaacttcggattattaggtcgcctttccatagg |
536 |
Q |
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| T |
37921890 |
attcggtagaacttgagttcgattcatgtggaataattattagtcggactttagttatttcttagccgaacttcggattattaggtcgcctttccatagg |
37921791 |
T |
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| Q |
537 |
aaccttcgggataatataaaagaaaattagttaatttaatccataacatcttaatagtatgataaattaacggattttat |
616 |
Q |
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| T |
37921790 |
aaccttcgggataatataaaagaaaattagttaatttaatccataacatcttaatagtatgataaattaacggattttat |
37921711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 37922323 - 37922123
Alignment:
| Q |
1 |
tgcttttctttgggctgccgctacattcctcgttgctgtctcctccaccttcttgcaggttcttacctctcttttcaatttttcataggcttgtttatta |
100 |
Q |
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| T |
37922323 |
tgcttttctttgggctgccgctacattcctcgttgctgtctcctccaccttcttgcaggttcttacctctcttttcaatttttcataggcttgtttatta |
37922224 |
T |
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| Q |
101 |
tgattgttttggttatggacatagtgggttcagtgcttttataactgatcatcttttttgtcaaaaagttatcataatctatagaacaaagacaactaga |
200 |
Q |
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| T |
37922223 |
tgattgttttggttatggacatagtgggttcagtgcttttataactgatcatcttttttgtcaaaaagttatcataatctatagaacaaagacaactaga |
37922124 |
T |
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| Q |
201 |
c |
201 |
Q |
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| T |
37922123 |
c |
37922123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 37925906 - 37925842
Alignment:
| Q |
1 |
tgcttttctttgggctgccgctacattcctcgttgctgtctcctccaccttcttgcaggttctta |
65 |
Q |
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| T |
37925906 |
tgcttttctttgggctgctgccactttcctcgtcgccatctcctccaccttcttacaggttctta |
37925842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 37937597 - 37937562
Alignment:
| Q |
1 |
tgcttttctttgggctgccgctacattcctcgttgc |
36 |
Q |
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| T |
37937597 |
tgcttttctttgggctgccgctacgttcctcgttgc |
37937562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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