View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18291_low_8 (Length: 565)

Name: NF18291_low_8
Description: NF18291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18291_low_8
NF18291_low_8
[»] chr3 (3 HSPs)
chr3 (69-546)||(41036666-41037143)
chr3 (392-445)||(47542542-47542595)
chr3 (393-445)||(21161498-21161550)
[»] chr6 (3 HSPs)
chr6 (393-442)||(10760844-10760892)
chr6 (393-425)||(17422274-17422306)
chr6 (378-438)||(24102049-24102109)
[»] chr1 (5 HSPs)
chr1 (376-437)||(43328458-43328519)
chr1 (286-325)||(9871490-9871529)
chr1 (383-425)||(47892675-47892717)
chr1 (150-194)||(9871340-9871384)
chr1 (393-445)||(43609817-43609869)
[»] scaffold0373 (1 HSPs)
scaffold0373 (380-442)||(1220-1280)
[»] chr8 (7 HSPs)
chr8 (393-444)||(43300520-43300571)
chr8 (376-438)||(6501486-6501548)
chr8 (376-429)||(11815820-11815873)
chr8 (393-438)||(31586283-31586328)
chr8 (392-436)||(2517114-2517158)
chr8 (392-444)||(34259795-34259847)
chr8 (394-438)||(43534933-43534977)
[»] chr5 (4 HSPs)
chr5 (385-436)||(39828466-39828517)
chr5 (393-431)||(16315881-16315919)
chr5 (376-437)||(38588299-38588360)
chr5 (393-445)||(5616211-5616263)
[»] chr4 (5 HSPs)
chr4 (380-442)||(6844647-6844707)
chr4 (392-426)||(25795782-25795816)
chr4 (385-442)||(30127676-30127733)
chr4 (394-442)||(3587929-3587977)
chr4 (392-444)||(19262924-19262976)
[»] chr2 (1 HSPs)
chr2 (376-443)||(33498619-33498686)


Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 69 - 546
Target Start/End: Complemental strand, 41037143 - 41036666
Alignment:
Q  69 aactctgccattgaagagctttcagtgcttgttatagtcaaacctgaagaagatcatgagtctggtgcacgcatcccaacaaagcctttcctatctttat 168  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  41037143 aactctgccattgaagagctttcagtgcttgttatagtcaaacctgaagaagatcatgaggctggtgcacgcatcccaacaaagcctttcctatctttat 41037044  T
Q  169 gttacatggttctacaagttcttggttagtaccaacatttttcatttatttttaatcatgatagttatgtaacaccaaacaaattttaagtatgtttttt 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41037043 gttacatggttctacaagttcttggttagtaccaacatttttcatttatttttaatcatgatagttatgtaacaccaaacaaattttaagtatgtttttt 41036944  T
Q  269 attgattgattgtcttgcagataaggtagggccaacaatggctgttttgagacaagacattcaccagaatattaaggtaaccaaatactcgcacacacat 368  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41036943 attgattgattatcttgcagataaggtagggccaacaatggctgttttgagacaagacattcaccagaatattaaggtaaccaaatactcgcacacacat 41036844  T
Q  369 gacatggtgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttgtctcaccggcggacacgagacaag 468  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  41036843 gacatggtgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttgtctcagtggcggacacgagacaag 41036744  T
Q  469 tttttaatttgaagttacttttttcagttaacatatagttagttacacattggtcaaacaaattaacatgcagctatg 546  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41036743 tttttagtttgaaattacttttttcagttaacatatagttagttacacattggtcaaacaaattaacatgcagctatg 41036666  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 392 - 445
Target Start/End: Original strand, 47542542 - 47542595
Alignment:
Q  392 gtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttgt 445  Q
    ||||||||||||||||||||  || |||||||||| |||| |||||| ||||||    
T  47542542 gtaataatttgagaaaatgaactatttgaatgtaatcacatgtgtcggtgttgt 47542595  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 445
Target Start/End: Complemental strand, 21161550 - 21161498
Alignment:
Q  393 taataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttgt 445  Q
    ||||||||||| ||||| ||||||||||||||||  | | |||||||||||||    
T  21161550 taataatttgaaaaaataatatagttgaatgtaattatatgtgtcgatgttgt 21161498  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 393 - 442
Target Start/End: Complemental strand, 10760892 - 10760844
Alignment:
Q  393 taataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgt 442  Q
    ||||||||||||||||||| ||| |||||||||| |||||||||||||||    
T  10760892 taataatttgagaaaatgacata-ttgaatgtaatcacacgtgtcgatgt 10760844  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 425
Target Start/End: Complemental strand, 17422306 - 17422274
Alignment:
Q  393 taataatttgagaaaatgatatagttgaatgta 425  Q
    ||||||||||||||||||||||| |||||||||    
T  17422306 taataatttgagaaaatgatataattgaatgta 17422274  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 438
Target Start/End: Complemental strand, 24102109 - 24102049
Alignment:
Q  378 acaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcg 438  Q
    |||| |||||||  ||||||||||||| || |||  || ||||||||||||||||||||||    
T  24102109 acactttgacactggtaataatttgagtaagtgaactatttgaatgtaaccacacgtgtcg 24102049  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 376 - 437
Target Start/End: Original strand, 43328458 - 43328519
Alignment:
Q  376 tgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtc 437  Q
    |||||| ||||||| | ||||||||||||||||||| ||| || |||||||||||| |||||    
T  43328458 tgacacgttgacacttataataatttgagaaaatgaaataatttaatgtaaccacatgtgtc 43328519  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 286 - 325
Target Start/End: Original strand, 9871490 - 9871529
Alignment:
Q  286 cagataaggtagggccaacaatggctgttttgagacaaga 325  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  9871490 cagataaaatagggccaacaatggctgttttgagacaaga 9871529  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 425
Target Start/End: Original strand, 47892675 - 47892717
Alignment:
Q  383 ttgacacatgtaataatttgagaaaatgatatagttgaatgta 425  Q
    ||||||||||||||||||||||||| ||| ||| |||||||||    
T  47892675 ttgacacatgtaataatttgagaaagtgaaatatttgaatgta 47892717  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 150 - 194
Target Start/End: Original strand, 9871340 - 9871384
Alignment:
Q  150 aagcctttcctatctttatgttacatggttctacaagttcttggt 194  Q
    ||||||||||| ||| |||||||  ||||||||||||||||||||    
T  9871340 aagcctttcctctctatatgttatttggttctacaagttcttggt 9871384  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 445
Target Start/End: Complemental strand, 43609869 - 43609817
Alignment:
Q  393 taataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttgt 445  Q
    ||||||||||||||||| | ||| |||||||||| |||| ||||| |||||||    
T  43609869 taataatttgagaaaataacataattgaatgtaatcacatgtgtccatgttgt 43609817  T

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Target: scaffold0373 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 442
Target Start/End: Complemental strand, 1280 - 1220
Alignment:
Q  380 accttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgt 442  Q
    |||||||||| ||||||||||||||||||||  | | |||||||||| |||| ||||||||||    
T  1280 accttgacacgtgtaataatttgagaaaatg--acaattgaatgtaatcacatgtgtcgatgt 1220  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 444
Target Start/End: Original strand, 43300520 - 43300571
Alignment:
Q  393 taataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttg 444  Q
    ||||||||||||||| | | ||| |||||||||| |||||||||||||||||    
T  43300520 taataatttgagaaagttaaatatttgaatgtaatcacacgtgtcgatgttg 43300571  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 376 - 438
Target Start/End: Original strand, 6501486 - 6501548
Alignment:
Q  376 tgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcg 438  Q
    |||||| |||||||  |||||||||||||| ||||| ||| || |||||||||||| ||||||    
T  6501486 tgacacgttgacactggtaataatttgagagaatgaaataattaaatgtaaccacatgtgtcg 6501548  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 429
Target Start/End: Original strand, 11815820 - 11815873
Alignment:
Q  376 tgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaacca 429  Q
    |||||| |||||||   |||||||||||||||||| |||| |||||||||||||    
T  11815820 tgacacgttgacaccaataataatttgagaaaatgttataattgaatgtaacca 11815873  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 31586328 - 31586283
Alignment:
Q  393 taataatttgagaaaatgatatagttgaatgtaaccacacgtgtcg 438  Q
    ||||||||||||||||||||||| |  ||||||| |||||||||||    
T  31586328 taataatttgagaaaatgatataatataatgtaatcacacgtgtcg 31586283  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 436
Target Start/End: Original strand, 2517114 - 2517158
Alignment:
Q  392 gtaataatttgagaaaatgatatagttgaatgtaaccacacgtgt 436  Q
    ||||||||||||||||||||  || ||||||||||| ||||||||    
T  2517114 gtaataatttgagaaaatgaattaattgaatgtaactacacgtgt 2517158  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 34259847 - 34259795
Alignment:
Q  392 gtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttg 444  Q
    |||||||||||||||||||| ||| |||||| |||| | |||||||| |||||    
T  34259847 gtaataatttgagaaaatgaaataattgaatataactagacgtgtcggtgttg 34259795  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 438
Target Start/End: Original strand, 43534933 - 43534977
Alignment:
Q  394 aataatttgagaaaatgatatagttgaatgtaaccacacgtgtcg 438  Q
    |||||||||||||||||| ||| ||||||||||| ||| ||||||    
T  43534933 aataatttgagaaaatgaaatatttgaatgtaactacatgtgtcg 43534977  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 436
Target Start/End: Original strand, 39828466 - 39828517
Alignment:
Q  385 gacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgt 436  Q
    ||||| |||||||||||||||| |||| ||| ||||||||||||||| ||||    
T  39828466 gacacttgtaataatttgagaatatgaaataattgaatgtaaccacatgtgt 39828517  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 393 - 431
Target Start/End: Original strand, 16315881 - 16315919
Alignment:
Q  393 taataatttgagaaaatgatatagttgaatgtaaccaca 431  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  16315881 taataatttgaggaaatgatataattgaatgtaaccaca 16315919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 437
Target Start/End: Complemental strand, 38588360 - 38588299
Alignment:
Q  376 tgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtc 437  Q
    |||||| |||||||| |||||||||||||||| ||| ||| | |||| |||||||| |||||    
T  38588360 tgacacgttgacacaagtaataatttgagaaagtgaaatattagaatctaaccacatgtgtc 38588299  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 445
Target Start/End: Complemental strand, 5616263 - 5616211
Alignment:
Q  393 taataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttgt 445  Q
    ||||||||||| ||||| ||||||||||||||||  | | |||||||||||||    
T  5616263 taataatttgaaaaaataatatagttgaatgtaattatatgtgtcgatgttgt 5616211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 442
Target Start/End: Complemental strand, 6844707 - 6844647
Alignment:
Q  380 accttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgt 442  Q
    |||||||||| ||||||||||||||||||||  | | |||||||||| |||| ||||||||||    
T  6844707 accttgacacgtgtaataatttgagaaaatg--acaattgaatgtaatcacatgtgtcgatgt 6844647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 426
Target Start/End: Complemental strand, 25795816 - 25795782
Alignment:
Q  392 gtaataatttgagaaaatgatatagttgaatgtaa 426  Q
    ||||||||||||||||||||||||||| |||||||    
T  25795816 gtaataatttgagaaaatgatatagttaaatgtaa 25795782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 442
Target Start/End: Complemental strand, 30127733 - 30127676
Alignment:
Q  385 gacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgt 442  Q
    ||||||||| ||| ||||||||||||| ||  ||||||||||||||| ||||| ||||    
T  30127733 gacacatgtgatagtttgagaaaatgaaattattgaatgtaaccacatgtgtcaatgt 30127676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 442
Target Start/End: Original strand, 3587929 - 3587977
Alignment:
Q  394 aataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgt 442  Q
    |||||||||||||| ||| ||| ||||||||||||||| ||||| ||||    
T  3587929 aataatttgagaaagtgaaatatttgaatgtaaccacatgtgtccatgt 3587977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 392 - 444
Target Start/End: Complemental strand, 19262976 - 19262924
Alignment:
Q  392 gtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgttg 444  Q
    ||||||||||||||| |||| ||| |||||||||| |||| ||||| ||||||    
T  19262976 gtaataatttgagaagatgacataattgaatgtaatcacatgtgtcaatgttg 19262924  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 33498619 - 33498686
Alignment:
Q  376 tgacaccttgacacatgtaataatttgagaaaatgatatagttgaatgtaaccacacgtgtcgatgtt 443  Q
    |||||| | |||||| |||||||||||||||||||  ||| ||||||||||||  |||||||| ||||    
T  33498619 tgacacgtcgacacaagtaataatttgagaaaatggaataattgaatgtaacctgacgtgtcggtgtt 33498686  T

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