View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18292_high_1 (Length: 300)

Name: NF18292_high_1
Description: NF18292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18292_high_1
NF18292_high_1
[»] chr3 (15 HSPs)
chr3 (2-294)||(50941604-50941896)
chr3 (82-169)||(17517604-17517693)
chr3 (106-172)||(25299030-25299096)
chr3 (83-173)||(53766661-53766753)
chr3 (121-172)||(42676692-42676743)
chr3 (123-169)||(7590739-7590785)
chr3 (106-172)||(22288467-22288533)
chr3 (121-173)||(26886064-26886116)
chr3 (110-173)||(4842639-4842701)
chr3 (119-173)||(4868344-4868397)
chr3 (106-168)||(23554667-23554729)
chr3 (106-169)||(35524283-35524346)
chr3 (211-249)||(48180269-48180307)
chr3 (141-169)||(1094809-1094837)
chr3 (125-157)||(22288772-22288804)
[»] chr4 (13 HSPs)
chr4 (106-173)||(51291132-51291199)
chr4 (107-173)||(13404209-13404275)
chr4 (108-173)||(949875-949940)
chr4 (121-173)||(14964375-14964427)
chr4 (110-153)||(8607613-8607656)
chr4 (106-157)||(20493352-20493403)
chr4 (130-173)||(20784978-20785021)
chr4 (106-173)||(41981036-41981103)
chr4 (111-169)||(17317535-17317593)
chr4 (103-169)||(49236729-49236795)
chr4 (210-251)||(23230333-23230374)
chr4 (121-169)||(25138935-25138983)
chr4 (211-251)||(51834882-51834922)
[»] chr8 (13 HSPs)
chr8 (82-172)||(11778503-11778595)
chr8 (106-173)||(28459985-28460052)
chr8 (106-172)||(8785276-8785342)
chr8 (107-173)||(18808760-18808826)
chr8 (79-173)||(18181195-18181286)
chr8 (120-173)||(38167491-38167544)
chr8 (132-173)||(35139042-35139083)
chr8 (132-173)||(36782782-36782823)
chr8 (77-170)||(39644095-39644190)
chr8 (127-173)||(12787894-12787940)
chr8 (127-169)||(41207774-41207816)
chr8 (111-172)||(11533279-11533340)
chr8 (200-248)||(18181315-18181363)
[»] chr7 (15 HSPs)
chr7 (82-173)||(38973998-38974091)
chr7 (106-173)||(17302937-17303004)
chr7 (107-173)||(17003436-17003502)
chr7 (82-173)||(30626039-30626132)
chr7 (79-173)||(34534753-34534846)
chr7 (77-172)||(19914899-19914994)
chr7 (111-173)||(8327827-8327889)
chr7 (121-172)||(32724481-32724532)
chr7 (127-173)||(21513069-21513115)
chr7 (120-157)||(16180460-16180497)
chr7 (110-170)||(36821784-36821844)
chr7 (133-173)||(42265457-42265497)
chr7 (209-250)||(7596243-7596283)
chr7 (114-167)||(24139842-24139895)
chr7 (120-173)||(37797982-37798035)
[»] scaffold0062 (1 HSPs)
scaffold0062 (79-173)||(3033-3129)
[»] chr1 (16 HSPs)
chr1 (82-166)||(11624043-11624128)
chr1 (80-173)||(48872208-48872303)
chr1 (78-168)||(11867806-11867898)
chr1 (106-173)||(11700442-11700510)
chr1 (105-173)||(29523549-29523617)
chr1 (82-172)||(34046406-34046494)
chr1 (109-173)||(9554088-9554152)
chr1 (105-172)||(31492928-31492995)
chr1 (106-173)||(38598298-38598365)
chr1 (132-169)||(10895364-10895401)
chr1 (110-173)||(44957033-44957096)
chr1 (127-169)||(32047319-32047361)
chr1 (119-173)||(52268104-52268157)
chr1 (132-173)||(49446475-49446516)
chr1 (125-173)||(40406248-40406295)
chr1 (214-250)||(43025014-43025050)
[»] chr6 (6 HSPs)
chr6 (82-173)||(34184993-34185086)
chr6 (106-169)||(2086862-2086925)
chr6 (106-169)||(5924779-5924842)
chr6 (80-173)||(34556192-34556287)
chr6 (211-253)||(30509282-30509324)
chr6 (212-248)||(2424391-2424427)
[»] chr5 (9 HSPs)
chr5 (105-171)||(2112592-2112658)
chr5 (80-170)||(17977675-17977764)
chr5 (111-173)||(544047-544109)
chr5 (82-172)||(5394003-5394095)
chr5 (121-173)||(31537743-31537795)
chr5 (106-173)||(20041609-20041676)
chr5 (121-173)||(36486957-36487010)
chr5 (133-169)||(8143715-8143751)
chr5 (127-163)||(8961370-8961406)
[»] scaffold0036 (1 HSPs)
scaffold0036 (106-169)||(88287-88350)
[»] chr2 (6 HSPs)
chr2 (106-172)||(26809047-26809113)
chr2 (125-171)||(36379406-36379452)
chr2 (111-173)||(37082199-37082261)
chr2 (125-173)||(3723407-3723455)
chr2 (210-251)||(5962062-5962103)
chr2 (129-173)||(36144084-36144128)
[»] scaffold0009 (1 HSPs)
scaffold0009 (120-169)||(168765-168814)
[»] scaffold0027 (1 HSPs)
scaffold0027 (77-169)||(13299-13391)
[»] scaffold0268 (1 HSPs)
scaffold0268 (81-170)||(20214-20305)
[»] scaffold0262 (1 HSPs)
scaffold0262 (103-169)||(17590-17656)


Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 294
Target Start/End: Complemental strand, 50941896 - 50941604
Alignment:
Q  2 acagtgctactgattgtatatgtgtagttaaaactcaacataaagtatgtattggttttgccaacggataatatgtatgagaaatgttaacgagtgcctt 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  50941896 acagtgctactgattgtatatgtgtagttaaaactcaacataaagtatgtattggttttgccaacggataatatgtatgagaaatgttaacgagtgcctc 50941797  T
Q  102 cgatactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaagnnnnnnnnnnnnnaaaagaacaattatt 201  Q
    ||||| | ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||| |    
T  50941796 cgatattttttaaagacctacagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaagtttttacttttttaaaagaacaattact 50941697  T
Q  202 ttataagaaatgcttaaagagtgtcacggagacactcattaacaagacccaaatatgtatttataagaggttttaggggtttgtctctgctgc 294  Q
     |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  50941696 ctataagaaatgcttaaagagtgtctcggggacactcattaacaagacccaaatatgtatttataagaggttttagggttttgtctttgctgc 50941604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 82 - 169
Target Start/End: Complemental strand, 17517693 - 17517604
Alignment:
Q  82 gaaatgttaacgagtgccttcgat--actctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaatt 169  Q
    ||||||||||||||||||| ||    |||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17517693 gaaatgttaacgagtgcctccggggcactcattaagcacccaaagtggtaagattgtatgaaagtttgtgcatttattgcattggaaatt 17517604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 25299030 - 25299096
Alignment:
Q  106 actctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaa 172  Q
    |||||||||  |||||||||  |||||||||||||||||||||||||||||||||||| ||||||||    
T  25299030 actctttaaacacctaaagtaataagattttatgaaagtttgtgcatttattgcattgaaaattgaa 25299096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 53766661 - 53766753
Alignment:
Q  83 aaatgttaacgagtgccttcgat--actctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||||||||||||| ||  |||  |||||||||| | ||||| |||||| |||||||||||||||||| ||||||||||||| |||||||||    
T  53766661 aaatgttaacgagtgtctctgatgtactctttaagcatctaaaatggtaatattttatgaaagtttgtgtatttattgcattgaaaattgaag 53766753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 172
Target Start/End: Original strand, 42676692 - 42676743
Alignment:
Q  121 aaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaa 172  Q
    ||||||||||| ||||||||||||||||||||||||| ||||| ||||||||    
T  42676692 aaagtggtaagtttttatgaaagtttgtgcatttattacattgaaaattgaa 42676743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 7590785 - 7590739
Alignment:
Q  123 agtggtaagattttatgaaagtttgtgcatttattgcattggaaatt 169  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||    
T  7590785 agtggtaagattttatgaaagtttgtgtatttattgtattggaaatt 7590739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 22288467 - 22288533
Alignment:
Q  106 actctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaa 172  Q
    |||||||||| | | ||| |||||||||||||||||||||||||||||||||  |||| ||||||||    
T  22288467 actctttaagtatccaaaatggtaagattttatgaaagtttgtgcatttattatattgaaaattgaa 22288533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 173
Target Start/End: Original strand, 26886064 - 26886116
Alignment:
Q  121 aaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||||||||| ||||||||||||||||||||| |||| |||| |||||||||    
T  26886064 aaagtggtaagtttttatgaaagtttgtgcattcattgtattgaaaattgaag 26886116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 4842639 - 4842701
Alignment:
Q  110 tttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||||| | ||||||||||||||||||||||||| ||| |||||||||  ||||||||||||||    
T  4842639 tttaagcatctaaagtggtaagattttatgaaag-ttgagcatttattatattggaaattgaag 4842701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 4868344 - 4868397
Alignment:
Q  119 ctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||||||||||||||||||||||| ||| |||||||||  ||||||||||||||    
T  4868344 ctaaagtggtaagattttatgaaag-ttgagcatttattatattggaaattgaag 4868397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 23554667 - 23554729
Alignment:
Q  106 actctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaat 168  Q
    |||||||||| || |||| ||| |||||||||||| |||| ||| ||||||||||||||||||    
T  23554667 actctttaagaacttaaaatggaaagattttatgatagttcgtgtatttattgcattggaaat 23554729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 35524283 - 35524346
Alignment:
Q  106 actctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaatt 169  Q
    |||||||||| |  ||||||||||| ||||||| ||||||| ||||||||||  ||||||||||    
T  35524283 actctttaagcatttaaagtggtaaaattttataaaagtttatgcatttattttattggaaatt 35524346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 48180269 - 48180307
Alignment:
Q  211 atgcttaaagagtgtcacggagacactcattaacaagac 249  Q
    |||||||||||||||| ||||||||||| ||||||||||    
T  48180269 atgcttaaagagtgtcccggagacactcgttaacaagac 48180307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 169
Target Start/End: Complemental strand, 1094837 - 1094809
Alignment:
Q  141 aagtttgtgcatttattgcattggaaatt 169  Q
    |||||||||||||||||||||||||||||    
T  1094837 aagtttgtgcatttattgcattggaaatt 1094809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 157
Target Start/End: Original strand, 22288772 - 22288804
Alignment:
Q  125 tggtaagattttatgaaagtttgtgcatttatt 157  Q
    |||||||||||||||||| ||||||||||||||    
T  22288772 tggtaagattttatgaaaatttgtgcatttatt 22288804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 51291199 - 51291132
Alignment:
Q  106 actctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51291199 actctttaagcacctaaaatggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 51291132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 13404275 - 13404209
Alignment:
Q  107 ctctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||||||| |||||||||||||||||||||||||||||| || ||||||| | |||||||||||||    
T  13404275 ctctttaagcacctaaagtggtaagattttatgaaagtttatgtatttattacgttggaaattgaag 13404209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 949875 - 949940
Alignment:
Q  108 tctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||||||| | | ||| ||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  949875 tctttaagcatccaaaatggtaaggttttatgaaagtttgtgcatttattgcattgaaaattgaag 949940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 14964427 - 14964375
Alignment:
Q  121 aaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||| || |||||||||||||||||||||||||||| ||||| |||||||||    
T  14964427 aaagtagtcagattttatgaaagtttgtgcatttattacattgaaaattgaag 14964375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 153
Target Start/End: Original strand, 8607613 - 8607656
Alignment:
Q  110 tttaaggacctaaagtggtaagattttatgaaagtttgtgcatt 153  Q
    |||||| ||| |||||||||||||||||||||||||||||||||    
T  8607613 tttaagcaccaaaagtggtaagattttatgaaagtttgtgcatt 8607656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 20493403 - 20493352
Alignment:
Q  106 actctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttatt 157  Q
    |||||||||| ||| ||||||||||| ||||||| |||||||||||||||||    
T  20493403 actctttaagcacccaaagtggtaagcttttatgtaagtttgtgcatttatt 20493352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 130 - 173
Target Start/End: Complemental strand, 20785021 - 20784978
Alignment:
Q  130 agattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||    
T  20785021 agattttataaaagtttgttcatttattgcattgaaaattgaag 20784978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 41981036 - 41981103
Alignment:
Q  106 actctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||||||||| ||| |||||| |||| |||||||| ||||| |  ||||||||||||| |||||||||    
T  41981036 actctttaagcacccaaagtgctaagtttttatgagagtttatatatttattgcattgaaaattgaag 41981103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 17317593 - 17317535
Alignment:
Q  111 ttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaatt 169  Q
    ||||| |||||||||| ||| ||| ||| |||||||||| ||||||||||||| |||||    
T  17317593 ttaagcacctaaagtgttaatattatataaaagtttgtgtatttattgcattgaaaatt 17317535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 49236795 - 49236729
Alignment:
Q  103 gatactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaatt 169  Q
    ||||||||||||| | |||||||| ||| ||||||| ||| |||||| |||||||| |||| |||||    
T  49236795 gatactctttaagcatctaaagtgataatattttataaaaatttgtgtatttattgtattgaaaatt 49236729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 23230333 - 23230374
Alignment:
Q  210 aatgcttaaagagtgtcacggagacactcattaacaagaccc 251  Q
    ||||||||||||||||| ||||||||||| |||| |||||||    
T  23230333 aatgcttaaagagtgtctcggagacactcgttaataagaccc 23230374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 25138935 - 25138983
Alignment:
Q  121 aaagtggtaagattttatgaaagtttgtgcatttattgcattggaaatt 169  Q
    |||||| || |||||||||||| ||||| |||||||||||||| |||||    
T  25138935 aaagtgatatgattttatgaaaatttgtacatttattgcattgtaaatt 25138983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 51834922 - 51834882
Alignment:
Q  211 atgcttaaagagtgtcacggagacactcattaacaagaccc 251  Q
    |||||||||||||||| ||| || |||||||||||||||||    
T  51834922 atgcttaaagagtgtcccggggaaactcattaacaagaccc 51834882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 11778595 - 11778503
Alignment:
Q  82 gaaatgttaacgagtgccttcga--tactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaa 172  Q
    ||||||||||||||||| |||||  ||||||||||  |||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||    
T  11778595 gaaatgttaacgagtgcattcgaggtactctttaaacacctaaagtggtaagattttataaaattttgtgcatttattgcattagaaattgaa 11778503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 28459985 - 28460052
Alignment:
Q  106 actctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||||||||| | | |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28459985 actctttaagcatcaaaagtggtaagattttattaaagtttgtgcatttattgcattggaaattgaag 28460052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 8785276 - 8785342
Alignment:
Q  106 actctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaa 172  Q
    |||||||||| ||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  8785276 actctttaagcacccaaagtggtaagattttatgaaattttgtgtatttattgcattggaaattgaa 8785342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 173
Target Start/End: Original strand, 18808760 - 18808826
Alignment:
Q  107 ctctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  18808760 ctctttaagcacctaaaatggtaagattttatgaaagtttatgcatttattgcattagaaattgaag 18808826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 173
Target Start/End: Original strand, 18181195 - 18181286
Alignment:
Q  79 tgagaaatgttaacgagtgccttcgatactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||||| ||||||||||||  | ||||||||||||| |||||   ||||||  ||||||||||||||||| ||||||||||||| |||||||||    
T  18181195 tgagaaaggttaacgagtgctcttgatactctttaagcaccta---tggtaatcttttatgaaagtttgtgtatttattgcattgaaaattgaag 18181286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 38167544 - 38167491
Alignment:
Q  120 taaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  38167544 taaagtggtaagcttttatgaaagtctgtgcatttattgtattggaaattgaag 38167491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 35139042 - 35139083
Alignment:
Q  132 attttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  35139042 attttatgaaagtttgtgcatttattgcattgaaaattgaag 35139083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 173
Target Start/End: Original strand, 36782782 - 36782823
Alignment:
Q  132 attttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||||||||||||||||||||||||| |||| |||||||||    
T  36782782 attttatgaaagtttgtgcatttattgtattgaaaattgaag 36782823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 170
Target Start/End: Original strand, 39644095 - 39644190
Alignment:
Q  77 tatgagaaatgttaacgagtgccttc--gatactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattg 170  Q
    |||||||||| ||||||| ||  |||  |||||| || ||| || ||||||||||| ||||||| ||||||||| ||| ||||| |||||||||||    
T  39644095 tatgagaaatattaacgattgatttcaggatacttttcaagcacttaaagtggtaatattttataaaagtttgtacatctattgtattggaaattg 39644190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 12787940 - 12787894
Alignment:
Q  127 gtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||| |||||||||| |||||||||||| || ||||||||||||||    
T  12787940 gtaagtttttatgaaaatttgtgcatttaatgaattggaaattgaag 12787894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 169
Target Start/End: Complemental strand, 41207816 - 41207774
Alignment:
Q  127 gtaagattttatgaaagtttgtgcatttattgcattggaaatt 169  Q
    |||| |||||||||| ||||||||||||||||||||| |||||    
T  41207816 gtaaaattttatgaatgtttgtgcatttattgcattgaaaatt 41207774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 172
Target Start/End: Complemental strand, 11533340 - 11533279
Alignment:
Q  111 ttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaa 172  Q
    |||||| ||| || ||||||  |||||||||||||||||| || | ||||||||||||||||    
T  11533340 ttaagggccttaaatggtaattttttatgaaagtttgtgccttcagtgcattggaaattgaa 11533279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 248
Target Start/End: Original strand, 18181315 - 18181363
Alignment:
Q  200 ttttataagaaatgcttaaagagtgtcacggagacactcattaacaaga 248  Q
    |||||||| ||||| ||||||||||||  |||||||||| |||||||||    
T  18181315 ttttataaaaaatgtttaaagagtgtcctggagacactcgttaacaaga 18181363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 38973998 - 38974091
Alignment:
Q  82 gaaatgttaacgagtgccttcga--tactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||||||||||||||||| |||  || ||||| || ||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  38973998 gaaatgttaacgagtgcctccgagatattctttgagcactcaaagtggtaagcttttatgaaagtttgtgcatttattgcattggaaattgaag 38974091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 17303004 - 17302937
Alignment:
Q  106 actctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||||||||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||    
T  17303004 actctttaagcacctaaagtggtaatattctgtgaaagtttgtgcatttattgcattggaaattgaag 17302937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 17003502 - 17003436
Alignment:
Q  107 ctctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||||||  ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  17003502 ctctttaaacacctaaagtagtcagattttatgaaagtttgtgcatttattgcattggaaattgaag 17003436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 30626039 - 30626132
Alignment:
Q  82 gaaatgttaacgagtgccttcgatactct--ttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||||||||||||||  ||||| |||||  ||||| |||||||| | |||| |||||| ||||||||||||||| ||| ||||||||||||||    
T  30626039 gaaatgttaacgagtgttttcgagactctctttaagcacctaaagggataaggttttataaaagtttgtgcatttcttgtattggaaattgaag 30626132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 173
Target Start/End: Original strand, 34534753 - 34534846
Alignment:
Q  79 tgagaaatgttaacgagtgccttcga-tactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||||||||||||||||||  | ||| ||||||  ||| ||| ||| || ||| ||||||| ||||||||||||||||||||||||||||||||||    
T  34534753 tgagaaatgttaacgagtgtttccgaatactct--aagcacccaaaatgataaaattttataaaagtttgtgcatttattgcattggaaattgaag 34534846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 19914899 - 19914994
Alignment:
Q  77 tatgagaaatgttaacgagtgccttcgatactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaa 172  Q
    |||| |||||||||||||||||||  |  |||||||||  ||||||| | ||||| |||||||||  ||||||||||||||| |||| ||||||||    
T  19914899 tatgggaaatgttaacgagtgcctcgggcactctttaaacacctaaactagtaagtttttatgaatatttgtgcatttattgtattgaaaattgaa 19914994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 8327827 - 8327889
Alignment:
Q  111 ttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||| || |||| |||||||||||||| |||||||||| |||||||| ||||||||||||||    
T  8327827 ttaagcacataaaatggtaagattttataaaagtttgtgtatttattgtattggaaattgaag 8327889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 121 - 172
Target Start/End: Complemental strand, 32724532 - 32724481
Alignment:
Q  121 aaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaa 172  Q
    ||||| ||||||||||||||||||||||| |||||||| ||| |||||||||    
T  32724532 aaagtagtaagattttatgaaagtttgtgtatttattgaattagaaattgaa 32724481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 21513115 - 21513069
Alignment:
Q  127 gtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||| |||||||| ||||||||||||||| |||||||||||||||||    
T  21513115 gtaaaattttatggaagtttgtgcatttactgcattggaaattgaag 21513069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 16180497 - 16180460
Alignment:
Q  120 taaagtggtaagattttatgaaagtttgtgcatttatt 157  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  16180497 taaagtgataagattttatgaaagtttgtgcatttatt 16180460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 170
Target Start/End: Original strand, 36821784 - 36821844
Alignment:
Q  110 tttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattg 170  Q
    |||||| ||| |||||||||| |||||||||||||||| | |||||||| ||| |||||||    
T  36821784 tttaagcaccaaaagtggtaacattttatgaaagtttgcgtatttattgtattagaaattg 36821844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 173
Target Start/End: Complemental strand, 42265497 - 42265457
Alignment:
Q  133 ttttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||||| |||||||||||||||||||||||| |||||||||    
T  42265497 ttttataaaagtttgtgcatttattgcattgtaaattgaag 42265457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 250
Target Start/End: Original strand, 7596243 - 7596283
Alignment:
Q  209 aaatgcttaaagagtgtcacggagacactcattaacaagacc 250  Q
    |||||||||||||||| | |||||||||||||||||||||||    
T  7596243 aaatgcttaaagagtgcc-cggagacactcattaacaagacc 7596283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 24139842 - 24139895
Alignment:
Q  114 aggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaa 167  Q
    |||| |||| || |||||||||||||| |||||||| |||||||||||| ||||    
T  24139842 aggatctaaggtagtaagattttatgagagtttgtggatttattgcattagaaa 24139895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 37798035 - 37797982
Alignment:
Q  120 taaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||| |||||||||||||||||| ||| ||||||||||  |||| |||||||||    
T  37798035 taaaatggtaagattttatgaaaatttatgcatttattatattgaaaattgaag 37797982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 3129 - 3033
Alignment:
Q  79 tgagaaatgttaacgagtgccttc--gatactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||||||||||||| |||| | |  || |||||||||| ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  3129 tgagaaatgttaacgggtgcttccatgacactctttaagcacccaaagtagtaagattttatgaaagtttgtgcatttattgcagtggaaattgaag 3033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 11624043 - 11624128
Alignment:
Q  82 gaaatgttaacgagtgccttcgat-actctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaa 166  Q
    |||||||||||||||| |||  |  |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11624043 gaaatgttaacgagtgtcttgcagcactctttaagcaccaaaagtggtaagattttatgaaagtttgtgcatttattgcattggaa 11624128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 48872303 - 48872208
Alignment:
Q  80 gagaaatgttaacgagtg--ccttcgatactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||||||||| |||||||  |||| | ||||||||||| | | |||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  48872303 gagaaatgttgacgagtgttccttgggtactctttaagcatcaaaagtggtaagattttatgaaagtttatgcatttattacattggaaattgaag 48872208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 168
Target Start/End: Complemental strand, 11867898 - 11867806
Alignment:
Q  78 atgagaaatgttaacgagtg--ccttcgatactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaat 168  Q
    |||||||||| |||||||||  |||  ||||||||||||| | | |||||||||| ||||||||||||||||||||||||||||||| |||||    
T  11867898 atgagaaatgctaacgagtgtccctaggatactctttaagcatccaaagtggtaatattttatgaaagtttgtgcatttattgcattagaaat 11867806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 11700510 - 11700442
Alignment:
Q  106 actctttaaggacctaaagtggtaa-gattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||||||||| ||||||||| |||| | |||||||||||||||||||||||||||||||||||||||||    
T  11700510 actctttaagcacctaaagtagtaaagtttttatgaaagtttgtgcatttattgcattggaaattgaag 11700442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 29523549 - 29523617
Alignment:
Q  105 tactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||||||||| ||  | |||||||||||| |||||||||||||| |||||||||||||||||||||||    
T  29523549 tactctttaagcacacagagtggtaagattgtatgaaagtttgtgtatttattgcattggaaattgaag 29523617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 34046494 - 34046406
Alignment:
Q  82 gaaatgttaacgagtgccttcgatactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaa 172  Q
    ||||||||||||||||||   || |||||||||| ||  ||| ||||  ||||||||||||||||||||||||||||| ||||||||||||    
T  34046494 gaaatgttaacgagtgccccggacactctttaagcactcaaaatggt--gattttatgaaagtttgtgcatttattgctttggaaattgaa 34046406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 173
Target Start/End: Complemental strand, 9554152 - 9554088
Alignment:
Q  109 ctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||||| ||| ||||| |||| |||||||||||||||||||||||| || |||| |||||||||    
T  9554152 ctttaagcacccaaagtagtaatattttatgaaagtttgtgcatttaatgtattgaaaattgaag 9554088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 31492928 - 31492995
Alignment:
Q  105 tactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaa 172  Q
    ||||||||||| | | ||| | |||| ||||||||||||||||||||||||||| ||| |||||||||    
T  31492928 tactctttaagcatcaaaaatagtaaaattttatgaaagtttgtgcatttattgtattagaaattgaa 31492995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 38598298 - 38598365
Alignment:
Q  106 actctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||||||||| |  |||||| |||| ||| ||| ||| ||||||||||||||||||||||||||||||    
T  38598298 actctttaagcatttaaagtcgtaatattgtattaaattttgtgcatttattgcattggaaattgaag 38598365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 10895401 - 10895364
Alignment:
Q  132 attttatgaaagtttgtgcatttattgcattggaaatt 169  Q
    |||||||||||||||||||||||||||||||| |||||    
T  10895401 attttatgaaagtttgtgcatttattgcattgaaaatt 10895364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 173
Target Start/End: Original strand, 44957033 - 44957096
Alignment:
Q  110 tttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||||| | |||||||||||||||||||||||| ||| | || |||||| |||| |||||||||    
T  44957033 tttaagcatctaaagtggtaagattttatgaaaatttatacaattattgtattgaaaattgaag 44957096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 32047319 - 32047361
Alignment:
Q  127 gtaagattttatgaaagtttgtgcatttattgcattggaaatt 169  Q
    ||||||||||||||||| |||| |||||||||||||| |||||    
T  32047319 gtaagattttatgaaagattgtccatttattgcattgaaaatt 32047361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 52268104 - 52268157
Alignment:
Q  119 ctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||||| |||| |||||||||||||||||||||||| || ||| ||||||||||    
T  52268104 ctaaagtagtaatattttatgaaagtttgtgcattta-tgtattagaaattgaag 52268157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 49446516 - 49446475
Alignment:
Q  132 attttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||||||  ||||||||||||||||||||||| |||||||||    
T  49446516 attttatagaagtttgtgcatttattgcattgaaaattgaag 49446475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 40406295 - 40406248
Alignment:
Q  125 tggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||||||||||||||||||||||| | |||||| |||| |||||||||    
T  40406295 tggtaagattttatgaaagtttgtgta-ttattgtattgaaaattgaag 40406248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 43025014 - 43025050
Alignment:
Q  214 cttaaagagtgtcacggagacactcattaacaagacc 250  Q
    |||||||||||||| |||||||||| |||||||||||    
T  43025014 cttaaagagtgtcatggagacactcgttaacaagacc 43025050  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 34184993 - 34185086
Alignment:
Q  82 gaaatgttaacgagtgccttcga--tactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||||||||||||||| |  |||  |||| |||||| |||||||  |||||||||| |||||||||||||||||||||||||||||||||||||    
T  34184993 gaaatgttaacgagtgtccccgaaatactttttaagcacctaaatgggtaagatttaatgaaagtttgtgcatttattgcattggaaattgaag 34185086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 2086925 - 2086862
Alignment:
Q  106 actctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaatt 169  Q
    |||||||||| | | |||||||||| |||||||||||||||||||| |||||||||| ||||||    
T  2086925 actctttaagcatccaaagtggtaatattttatgaaagtttgtgcaattattgcattagaaatt 2086862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 5924842 - 5924779
Alignment:
Q  106 actctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaatt 169  Q
    |||||||||| ||| |||||||||| ||||||||||||||||||||| ||||| |||| |||||    
T  5924842 actctttaagcaccaaaagtggtaaaattttatgaaagtttgtgcatatattgtattgaaaatt 5924779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 173
Target Start/End: Complemental strand, 34556287 - 34556192
Alignment:
Q  80 gagaaatgttaacgagtgccttcg-atactctttaaggacctaaagtggtaagatttt-atgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||||||||| |||||||| | | | |||||||||| ||| ||  |||||| ||||| |||||||||||| ||||||||| ||||||||||||||    
T  34556287 gagaaatgttagcgagtgccctaggacactctttaagcacccaagatggtaaaatttttatgaaagtttgtacatttattgtattggaaattgaag 34556192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 30509324 - 30509282
Alignment:
Q  211 atgcttaaagagtgtcacggagacactcattaacaagacccaa 253  Q
    |||||||||||||||  ||||||||||| ||||||||||||||    
T  30509324 atgcttaaagagtgttccggagacactcgttaacaagacccaa 30509282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 2424391 - 2424427
Alignment:
Q  212 tgcttaaagagtgtcacggagacactcattaacaaga 248  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  2424391 tgcttaaagagtgtcccggagacactcgttaacaaga 2424427  T

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Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 2112658 - 2112592
Alignment:
Q  105 tactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattga 171  Q
    ||||||||||| | ||||||| |||||||||||| ||| ||||||||||||||||||||||||||||    
T  2112658 tactctttaagcatctaaagtagtaagattttataaaattttgtgcatttattgcattggaaattga 2112592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 80 - 170
Target Start/End: Original strand, 17977675 - 17977764
Alignment:
Q  80 gagaaatgttaacgagtgccttcgatactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattg 170  Q
    ||||||||||||||||||||   || ||| |||||| | | |||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  17977675 gagaaatgttaacgagtgcccctgacact-tttaagcatccaaagtggtaagattttctgaaagtttatgcatttattgcattggaaattg 17977764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 544109 - 544047
Alignment:
Q  111 ttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||| ||||||||| |||||||||||| ||||| |||||||||||||| |||||||||||||    
T  544109 ttaagcacctaaagtagtaagattttataaaagtgtgtgcatttattgcgttggaaattgaag 544047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 5394095 - 5394003
Alignment:
Q  82 gaaatgttaacgagtgc--cttcgatactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaa 172  Q
    |||||||||||||||||  ||  || |||||||||| | |||| || |||||||||||||||||||||||||||| ||| || ||||||||||    
T  5394095 gaaatgttaacgagtgcttctgagacactctttaagcatctaaggtagtaagattttatgaaagtttgtgcatttcttgtataggaaattgaa 5394003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 31537795 - 31537743
Alignment:
Q  121 aaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||||| ||| ||||||||||||||||||||| ||||||||| ||||||||||    
T  31537795 aaagtgataaaattttatgaaagtttgtgcatatattgcattagaaattgaag 31537743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 20041609 - 20041676
Alignment:
Q  106 actctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    |||||||||| | ||||| || ||| |||||| |||| ||| ||||||||||||||||||||||||||    
T  20041609 actctttaagcatctaaaatgataaaattttacgaaaatttatgcatttattgcattggaaattgaag 20041676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 173
Target Start/End: Complemental strand, 36487010 - 36486957
Alignment:
Q  121 aaagtggtaagattttatgaaagttt-gtgcatttattgcattggaaattgaag 173  Q
    ||||||||||||||||| |||||||| || |||||||||||||| |||||||||    
T  36487010 aaagtggtaagattttacgaaagttttgtacatttattgcattgaaaattgaag 36486957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 8143751 - 8143715
Alignment:
Q  133 ttttatgaaagtttgtgcatttattgcattggaaatt 169  Q
    |||||||||||||||| |||||||||||||| |||||    
T  8143751 ttttatgaaagtttgtacatttattgcattgaaaatt 8143715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 163
Target Start/End: Complemental strand, 8961406 - 8961370
Alignment:
Q  127 gtaagattttatgaaagtttgtgcatttattgcattg 163  Q
    |||| |||||||||||||||||| |||||||||||||    
T  8961406 gtaatattttatgaaagtttgtgtatttattgcattg 8961370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 88350 - 88287
Alignment:
Q  106 actctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaatt 169  Q
    |||||||||| ||| |||||||||| ||||||||||||||||||||||||||  ||||||||||    
T  88350 actctttaagtaccaaaagtggtaatattttatgaaagtttgtgcatttattatattggaaatt 88287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 26809113 - 26809047
Alignment:
Q  106 actctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaa 172  Q
    |||||||||| ||| ||||||||||| |||  ||||||||| |||||||||||||||||||||||||    
T  26809113 actctttaagcacccaaagtggtaagctttattgaaagtttatgcatttattgcattggaaattgaa 26809047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 36379452 - 36379406
Alignment:
Q  125 tggtaagattttatgaaagtttgtgcatttattgcattggaaattga 171  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||    
T  36379452 tggtaagattttatgaaagtttgttcatttattacattgaaaattga 36379406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 37082199 - 37082261
Alignment:
Q  111 ttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||| ||| ||| ||||||| |||||||||| |||||||||||||| ||||| |||||||||    
T  37082199 ttaagcacccaaaatggtaagcttttatgaaaatttgtgcatttattacattgaaaattgaag 37082261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 3723455 - 3723407
Alignment:
Q  125 tggtaagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||||||||||| |||| |||||| ||||||||||||| |||||||||    
T  3723455 tggtaagattttacgaaaatttgtgtatttattgcattgaaaattgaag 3723407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 5962062 - 5962103
Alignment:
Q  210 aatgcttaaagagtgtcacggagacactcattaacaagaccc 251  Q
    ||||||||||||||||| ||||| ||||| ||||||||||||    
T  5962062 aatgcttaaagagtgtctcggaggcactcgttaacaagaccc 5962103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 36144128 - 36144084
Alignment:
Q  129 aagattttatgaaagtttgtgcatttattgcattggaaattgaag 173  Q
    ||||||||||||||  ||||| |||||||| ||||||||||||||    
T  36144128 aagattttatgaaaaattgtgtatttattgaattggaaattgaag 36144084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 168765 - 168814
Alignment:
Q  120 taaagtggtaagattttatgaaagtttgtgcatttattgcattggaaatt 169  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  168765 taaagtggtaagattttatgaaagtttgtgcatttattatattggaaatt 168814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 169
Target Start/End: Original strand, 13299 - 13391
Alignment:
Q  77 tatgagaaatgttaacgagtgccttcgatactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaatt 169  Q
    ||||| |||||||||||| ||||   || |||||||||| ||| ||| || ||| |||||||||||||||||| | |||||||||||||||||    
T  13299 tatgaaaaatgttaacgaatgcccgagacactctttaagcacccaaaatgttaaaattttatgaaagtttgtgtaattattgcattggaaatt 13391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 170
Target Start/End: Original strand, 20214 - 20305
Alignment:
Q  81 agaaatgttaacgagtgccttc--gatactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaattg 170  Q
    ||||||||||||||||||||||  || |||||||||| || | || || |||| ||||||||||  ||||| ||||| |||||| |||||||    
T  20214 agaaatgttaacgagtgccttcatgacactctttaagcactttaaatgataagtttttatgaaaagttgtgtatttaatgcatttgaaattg 20305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 17656 - 17590
Alignment:
Q  103 gatactctttaaggacctaaagtggtaagattttatgaaagtttgtgcatttattgcattggaaatt 169  Q
    ||||||||||||  | | ||||| |||||||||||||||| ||||| |||||||| ||||| |||||    
T  17656 gatactctttaaacatcaaaagtagtaagattttatgaaattttgtacatttattacattgaaaatt 17590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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