View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18293_high_3 (Length: 508)
Name: NF18293_high_3
Description: NF18293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18293_high_3 |
 | |
|
| [»] scaffold0531 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 164 - 493
Target Start/End: Original strand, 34409200 - 34409529
Alignment:
| Q |
164 |
tcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatg |
263 |
Q |
| |
|
|||||| | |||||||| | ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34409200 |
tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatg |
34409299 |
T |
|
| Q |
264 |
cttttggaccaaaattgggtctatatatcattgttccacaacaactactcgttgaggttggtacatgtattgcttatatggttactggaggcaaatcatt |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34409300 |
cttttggaccaaaattgggtctatatatcattgttccacaacaactactcgttgaggttggtacatgtattgcttatatggttactggaggcaaatcatt |
34409399 |
T |
|
| Q |
364 |
gaagaaggttcaagaatctatatgcccaacatgtacaaaaattagaacttcctattggattgttatctttgcatctgtaaactttgttctctgtcagtgc |
463 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34409400 |
gaagaaggttcaagaatctatatgcccaacatgtacaaaaattagaacttcctattggattgttatctttgcatctgtaaactttgttctctgtcagtgc |
34409499 |
T |
|
| Q |
464 |
cccagcttcaactctatttctgctgtctct |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34409500 |
cccagcttcaactctatttctgctgtctct |
34409529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 309
Target Start/End: Complemental strand, 14199050 - 14198760
Alignment:
| Q |
18 |
tgaattttatgaatgttttggtaaattatttttcacattgtactcaagactacctcattaggggacttcaatacattttcatacatttgttgagttggaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14199050 |
tgaattttatgaatgttttggtaaattatttttcacattgtactcaagact-cctcattaggtgacttcaatacattttcatacatttgttgaattggaa |
14198952 |
T |
|
| Q |
118 |
tttacaatgtgttttcaggggtcctggagtaacagtattagtcctctcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14198951 |
tttacaatgtgttttcaggggtcctggagtaacagtattagtcctctcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatg |
14198852 |
T |
|
| Q |
218 |
gtgccaggaacaagatttgacaggtatcatgagcttggtcaacatgcttttggaccaaaattgggtctatatatcattgttccacaacaact |
309 |
Q |
| |
|
|| || || | | | || || || |||||||| || |||||| |||||||||| ||| |||||||| ||||| |||| ||||||||||| |
|
|
| T |
14198851 |
gtacccgggaaacgtttcgatagatatcatgaactgggtcaatatgcttttggtgaaaagttgggtctgtatattgttgtgccacaacaact |
14198760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 164 - 291
Target Start/End: Complemental strand, 7979508 - 7979381
Alignment:
| Q |
164 |
tcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatg |
263 |
Q |
| |
|
|||||| |||||||||| ||||| | ||||||||||||||||||||||||||||| || |||| | | ||||| || || ||||| | |||||||||| |
|
|
| T |
7979508 |
tcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatgaattaggtcaacatg |
7979409 |
T |
|
| Q |
264 |
cttttggaccaaaattgggtctatatat |
291 |
Q |
| |
|
||||||| |||||| ||||| ||||| |
|
|
| T |
7979408 |
cttttgggaaaaaattaggtctttatat |
7979381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 227
Target Start/End: Original strand, 8041742 - 8041811
Alignment:
| Q |
158 |
gtcctctcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatggtgccaggaa |
227 |
Q |
| |
|
||||| |||||| |||||||| | ||||| || ||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
8041742 |
gtcctttcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaa |
8041811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 227
Target Start/End: Complemental strand, 7971940 - 7971877
Alignment:
| Q |
164 |
tcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatggtgccaggaa |
227 |
Q |
| |
|
|||||| |||||||| | ||||| || ||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
7971940 |
tcatggatcatcacactgtacaccttgtggcaaatggttgagatgcatgagatggttccaggaa |
7971877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 164 - 259
Target Start/End: Complemental strand, 38827480 - 38827385
Alignment:
| Q |
164 |
tcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaa |
259 |
Q |
| |
|
|||||| |||| || || ||||| |||||||||||||||||||||||||||| || || |||| ||||| || |||||||||||| | |||||| |
|
|
| T |
38827480 |
tcatgggtcattaccttctacactatatggcaaatggttgagatgcatgaaatagttcccggaaagagattggataggtatcatgagttgggtcaa |
38827385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 189 - 250
Target Start/End: Original strand, 43853159 - 43853220
Alignment:
| Q |
189 |
tatggcaaatggttgagatgcatgaaatggtgccaggaacaagatttgacaggtatcatgag |
250 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||| | | ||||| ||||| |||||| |
|
|
| T |
43853159 |
tatggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatgag |
43853220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 270
Target Start/End: Complemental strand, 3436 - 3357
Alignment:
| Q |
191 |
tggcaaatggttgagatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatgcttttgg |
270 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||| | | ||||| ||||| ||||| || || ||||| || ||||| |
|
|
| T |
3436 |
tggcaaatggttgagatgcatgaaatggttcctggaaaacgttttgataggtaccatgaactgggacaacacgcgtttgg |
3357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University